Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0477 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAGCCCAATAACAATGCGATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTGAAAAAGCTTTCAGAATTCAAAAAAACAGCCCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGATTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTCAAGGATTACGGCGTCGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGGCGGTTGTTGCAGGAGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCAGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAACGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAACACTGCGGGACCCGAAAACCACCAAGCAGTAGCCCTTCGGTCAGGCTCCGATCTCTCGGTGTTCTTCCGGTGCGGTTTCGAGGGATACCAAGACACTCTCTACGTGCACTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACAGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTCTCCAGAACTGCATGATCTATGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACTGTTGGGAATTTTATCGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA 1560 46.73 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQEAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHITRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4871421 4874048 - CePI673135_01g004770.1 Cec01g0477 193694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0477 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Cec01g0477 519 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Cec01g0477 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cec01g0477 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cec01g0477 519 FunFam Pectinesterase 203 519 - -
Cec01g0477 519 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Cec01g0477 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Cec01g0477 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Cec01g0477 519 CDD PMEI-like_3 35 175 - -
Cec01g0477 519 PANTHER PECTINESTERASE 9 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec01g0477 519 Gene3D - 203 519 IPR012334 -
Cec01g0477 519 Pfam Pectinesterase 209 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0477 Cec-Chr1:4871421 Cec05g0879 Cec-Chr5:7607139 1.30E-196 dispersed
Cec01g0477 Cec-Chr1:4871421 Cec01g0644 Cec-Chr1:6986460 5.10E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0477 K01051 - csv:101216005 919.842