Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0540 | ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCACTACTTGTACTCTCTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTTACAGTATCTGTTTCAGTGGGTATAGGTTAAGGTCAGATGGCTTTAACAAAGGCAGCCAACTGACTACCTCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTTCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGCGATACTGATGAACGTAGTCAAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGATGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGTTGTTTCAATAGTGAATCAAGAGCCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTGGTCCAGGATGCTCTAAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACTGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA | 2214 | 42.86 | MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICFVPPACTYSWPADAYSICFSGYRLRSDGFNKGSQLTTSVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFSVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSSDTDERSQVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE | 737 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5610682 | 5617743 | + | CePI673135_01g005400.1 | Cec01g0540 | 193757 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0540 | 737 | Pfam | ABC transporter transmembrane region | 112 | 227 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
Cec01g0540 | 737 | Pfam | ABC transporter transmembrane region | 295 | 408 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
Cec01g0540 | 737 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 113 | 421 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
Cec01g0540 | 737 | Pfam | ABC transporter | 511 | 662 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cec01g0540 | 737 | Gene3D | ABC transporter type 1, transmembrane domain | 94 | 229 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
Cec01g0540 | 737 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 227 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
Cec01g0540 | 737 | CDD | ABC_MTABC3_MDL1_MDL2 | 493 | 732 | - | - | |
Cec01g0540 | 737 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 93 | 733 | IPR039421 | GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER) | |
Cec01g0540 | 737 | Gene3D | - | 491 | 734 | IPR027417 | - | |
Cec01g0540 | 737 | FunFam | ATP-binding cassette sub-family B member 8, mitochondrial | 491 | 735 | - | - | |
Cec01g0540 | 737 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 493 | 731 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cec01g0540 | 737 | Gene3D | ABC transporter type 1, transmembrane domain | 291 | 439 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
Cec01g0540 | 737 | CDD | ABC_6TM_TAP_ABCB8_10_like | 120 | 429 | - | - | |
Cec01g0540 | 737 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 484 | 732 | IPR027417 | - | |
Cec01g0540 | 737 | ProSitePatterns | ABC transporters family signature. | 634 | 648 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cec01g0540 | 737 | SUPERFAMILY | ABC transporter transmembrane region | 293 | 438 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
Cec01g0540 | 737 | SMART | AAA_5 | 520 | 714 | IPR003593 | GO:0016887(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0540 | Cec-Chr1:5610682 | Cec01g1711 | Cec-Chr1:31756665 | 2.30E-82 | dispersed | |
Cec11g0277 | Cec-Chr11:3002948 | Cec01g0540 | Cec-Chr1:5610682 | 6.80E-09 | dispersed | |
Cec01g0540 | Cec-Chr1:5610682 | Cec05g2841 | Cec-Chr5:38657075 | 6.40E-69 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0540 | K05657 | - | csv:101211598 | 1170.22 |