Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0540 ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCACTACTTGTACTCTCTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTTACAGTATCTGTTTCAGTGGGTATAGGTTAAGGTCAGATGGCTTTAACAAAGGCAGCCAACTGACTACCTCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTTCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGCGATACTGATGAACGTAGTCAAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGATGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAAATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGTTGTTTCAATAGTGAATCAAGAGCCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTGGTCCAGGATGCTCTAAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACTGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA 2214 42.86 MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEASNSSPSTSDWNNMYIICFVPPACTYSWPADAYSICFSGYRLRSDGFNKGSQLTTSVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFSVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSSDTDERSQVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARVVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5610682 5617743 + CePI673135_01g005400.1 Cec01g0540 193757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0540 737 Pfam ABC transporter transmembrane region 112 227 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cec01g0540 737 Pfam ABC transporter transmembrane region 295 408 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cec01g0540 737 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 421 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cec01g0540 737 Pfam ABC transporter 511 662 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec01g0540 737 Gene3D ABC transporter type 1, transmembrane domain 94 229 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec01g0540 737 SUPERFAMILY ABC transporter transmembrane region 101 227 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec01g0540 737 CDD ABC_MTABC3_MDL1_MDL2 493 732 - -
Cec01g0540 737 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 93 733 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Cec01g0540 737 Gene3D - 491 734 IPR027417 -
Cec01g0540 737 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 491 735 - -
Cec01g0540 737 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 493 731 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec01g0540 737 Gene3D ABC transporter type 1, transmembrane domain 291 439 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec01g0540 737 CDD ABC_6TM_TAP_ABCB8_10_like 120 429 - -
Cec01g0540 737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 732 IPR027417 -
Cec01g0540 737 ProSitePatterns ABC transporters family signature. 634 648 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec01g0540 737 SUPERFAMILY ABC transporter transmembrane region 293 438 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec01g0540 737 SMART AAA_5 520 714 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0540 Cec-Chr1:5610682 Cec01g1711 Cec-Chr1:31756665 2.30E-82 dispersed
Cec11g0277 Cec-Chr11:3002948 Cec01g0540 Cec-Chr1:5610682 6.80E-09 dispersed
Cec01g0540 Cec-Chr1:5610682 Cec05g2841 Cec-Chr5:38657075 6.40E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0540 K05657 - csv:101211598 1170.22