Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0567 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCGACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCGGCTTGTCTTAATTTTGCTGACTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCGGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 55.18 MDFSDSFSSSRLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5921218 5921835 + CePI673135_01g005670.1 Cec01g0567 193784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0567 205 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Cec01g0567 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Cec01g0567 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec01g0567 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 203 IPR045277 GO:0003700(InterPro)
Cec01g0567 205 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0305 Cec-Chr1:3114058 Cec01g0567 Cec-Chr1:5921218 5.60E-56 dispersed
Cec01g0567 Cec-Chr1:5921218 Cec10g1944 Cec-Chr10:34254389 6.00E-33 dispersed
Cec01g0567 Cec-Chr1:5921218 Cec05g0937 Cec-Chr5:8166824 4.30E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28863 PF00847 AP2 7.60E-15 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0567 - - - 0.0