Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0599 ATGTCAAAAGCGAACGAGAGCTTCGAGTTTTTAACTACAGCAAACGTTTCGCTCTGCTTTTCCCTCCATATCCGAGCCCCCAAATCTTCCTCCTATAAAACTACTTCATCTTCTCCATTCCTCAACTCTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCCTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATGTTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCGAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTACGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGCCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGGTGA 1233 52.39 MSKANESFEFLTTANVSLCFSLHIRAPKSSSYKTTSSSPFLNSLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDVSDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6344678 6348264 + CePI673135_01g005990.1 Cec01g0599 193816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0599 410 SUPERFAMILY CCCH zinc finger 356 390 IPR036855 GO:0046872(InterPro)
Cec01g0599 410 Gene3D - 356 392 - -
Cec01g0599 410 Gene3D - 316 355 - -
Cec01g0599 410 Coils Coil 161 181 - -
Cec01g0599 410 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 323 348 IPR000571 GO:0046872(InterPro)
Cec01g0599 410 ProSiteProfiles Zinc finger C3H1-type profile. 322 350 IPR000571 GO:0046872(InterPro)
Cec01g0599 410 SUPERFAMILY CCCH zinc finger 319 354 IPR036855 GO:0046872(InterPro)
Cec01g0599 410 FunFam Zinc finger protein 36, C3H1 type-like 1 356 392 - -
Cec01g0599 410 SMART c3hfinal6 322 349 IPR000571 GO:0046872(InterPro)
Cec01g0599 410 SMART c3hfinal6 360 387 IPR000571 GO:0046872(InterPro)
Cec01g0599 410 ProSiteProfiles Zinc finger C3H1-type profile. 360 388 IPR000571 GO:0046872(InterPro)
Cec01g0599 410 FunFam zinc finger CCCH domain-containing protein 15-like 316 355 - -
Cec01g0599 410 PANTHER CCCH ZINC FINGER/TIS11-RELATED 119 388 IPR045877 GO:0003729(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0599 Cec-Chr1:6344678 Cec11g0751 Cec-Chr11:8600777 2.60E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28867 PF00642 zf-CCCH 6.60E-12 CL0537 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0599 K18753 - csv:101203274 622.854