Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0608 | ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCGTCAACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCAACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAGATGGAATGCAAGTATTTGAAGAGATGGTTTGAATCATTAACAGAGCAAAACCACCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACTTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATATAGTAAGGCTGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA | 666 | 48.35 | MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECKYLKRWFESLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITYSKAAIAAATKPSKVVTSTLKLHQPSRAC | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6506797 | 6510266 | + | CePI673135_01g006080.1 | Cec01g0608 | 193825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0608 | 221 | FunFam | Homeobox-leucine zipper protein 18 | 54 | 132 | - | - | |
Cec01g0608 | 221 | Pfam | Homeodomain | 71 | 125 | IPR001356 | GO:0003677(InterPro) | |
Cec01g0608 | 221 | SUPERFAMILY | Homeodomain-like | 59 | 128 | IPR009057 | - | |
Cec01g0608 | 221 | Pfam | Homeobox associated leucine zipper | 127 | 159 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec01g0608 | 221 | Gene3D | - | 64 | 135 | - | - | |
Cec01g0608 | 221 | ProSiteProfiles | 'Homeobox' domain profile. | 67 | 127 | IPR001356 | GO:0003677(InterPro) | |
Cec01g0608 | 221 | SMART | halz | 127 | 170 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cec01g0608 | 221 | SMART | HOX_1 | 69 | 131 | IPR001356 | GO:0003677(InterPro) | |
Cec01g0608 | 221 | ProSitePatterns | 'Homeobox' domain signature. | 102 | 125 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cec01g0608 | 221 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 35 | 206 | IPR050762 | - | |
Cec01g0608 | 221 | CDD | homeodomain | 70 | 128 | IPR001356 | GO:0003677(InterPro) | |
Cec01g0608 | 221 | Coils | Coil | 140 | 160 | - | - | |
Cec01g0608 | 221 | MobiDBLite | consensus disorder prediction | 39 | 72 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0608 | Cec-Chr1:6506797 | Cec07g0721 | Cec-Chr7:13812448 | 1.20E-55 | dispersed | |
Cec01g0608 | Cec-Chr1:6506797 | Cec09g0378 | Cec-Chr9:3241315 | 1.80E-35 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28868 | PF00046 | Homeodomain | 9.60E-17 | CL0123 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0608 | K09338 | - | csv:101206325 | 299.286 |