Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0608 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCGTCAACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCAACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAGATGGAATGCAAGTATTTGAAGAGATGGTTTGAATCATTAACAGAGCAAAACCACCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACTTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATATAGTAAGGCTGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 666 48.35 MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECKYLKRWFESLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITYSKAAIAAATKPSKVVTSTLKLHQPSRAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6506797 6510266 + CePI673135_01g006080.1 Cec01g0608 193825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0608 221 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Cec01g0608 221 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Cec01g0608 221 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Cec01g0608 221 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0608 221 Gene3D - 64 135 - -
Cec01g0608 221 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Cec01g0608 221 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cec01g0608 221 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Cec01g0608 221 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cec01g0608 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 206 IPR050762 -
Cec01g0608 221 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Cec01g0608 221 Coils Coil 140 160 - -
Cec01g0608 221 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0608 Cec-Chr1:6506797 Cec07g0721 Cec-Chr7:13812448 1.20E-55 dispersed
Cec01g0608 Cec-Chr1:6506797 Cec09g0378 Cec-Chr9:3241315 1.80E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28868 PF00046 Homeodomain 9.60E-17 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0608 K09338 - csv:101206325 299.286