Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0614 ATGAGCAGCGAAGTCGTCGGAGACGGCCAGCGGCGTGCCTTAGCACTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCGATCGCCGGCACCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGAAGCAGGGAGAATTTTGAGGTATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGTTGTGCGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAATCCTGAAGAAAAGAAGCTTCAAGCTAGGTCAGGTTCTGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGTGTTGATGATGGAGATGTCGAGTCTCAGCATCATCGTCCTCGGAACCGCGACCACCTGACTAGTTTCGATTCGTTGAATTCTTGCTTTGATGAGTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAGAAGCCTGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCTGTCATTGTCTCTACGGGACAGACATATGAAAGATCCAACATACAAAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAGGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGATTGCCAAAGGACTGTGCCGATCAAAACTTTGGTTCGACACCTTTCATTCGGGTCGATTCAGGAGCAGAAGATCGCCGTGACCGAGATCCGAAAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAACCTTTTAACTTCAAAGGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAGAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCCGCAACAATTTACAGCTTGTCATTAGCCGATGAGAACAAGGCGATAATTGGGGCTTCCGGAGTGATCTCGGACCTGTTAAAAATCCTCGAGATCGGTAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTACGATGTCGAATGCGAATTCATTGCTTGTTTTGACTGACATTCTGAAGACGGGGTCGCCTCGCAACAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTATGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGCACGGCGAGAGCGAGGCGAAAGGCTGCTTTATTGTTGGACCAACTTGGAAAATCATGA 1929 45.36 MSSEVVGDGQRRALALQLLDLVRDFVLMSGRSIAGTGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSRENFEVLNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCATSTEGATKKLVLQFQYVTTRLETALSNLPYDHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPEEKKLQARSGSVKWMISNDVKSMSSVDDGDVESQHHRPRNRDHLTSFDSLNSCFDECSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEDDCQRTVPIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVISDLLKILEIGSPRGQKDAAGALLNLCMHQGNKGRALKAGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKATMSNANSLLVLTDILKTGSPRNKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6608904 6613343 - CePI673135_01g006140.1 Cec01g0614 193831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0614 642 SUPERFAMILY ARM repeat 366 639 IPR016024 -
Cec01g0614 642 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 406 448 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 Coils Coil 155 175 - -
Cec01g0614 642 Pfam Armadillo/beta-catenin-like repeat 395 434 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 MobiDBLite consensus disorder prediction 205 224 - -
Cec01g0614 642 Gene3D - 364 481 IPR011989 -
Cec01g0614 642 PANTHER U BOX DOMAIN-CONTAINING 38 639 - -
Cec01g0614 642 SMART Ubox_2 270 333 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g0614 642 CDD RING-Ubox_PUB 268 320 IPR045210 -
Cec01g0614 642 MobiDBLite consensus disorder prediction 207 224 - -
Cec01g0614 642 Pfam U-box domain 267 338 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g0614 642 SUPERFAMILY RING/U-box 262 340 - -
Cec01g0614 642 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Cec01g0614 642 FunFam RING-type E3 ubiquitin transferase 351 642 - -
Cec01g0614 642 Gene3D - 482 641 IPR011989 -
Cec01g0614 642 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g0614 642 SMART arm_5 395 435 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 SMART arm_5 436 476 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 SMART arm_5 477 517 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 SMART arm_5 559 599 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 SMART arm_5 518 558 IPR000225 GO:0005515(InterPro)
Cec01g0614 642 FunFam RING-type E3 ubiquitin transferase 267 339 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0614 Cec-Chr1:6608904 Cec05g2340 Cec-Chr5:34660502 1.80E-54 dispersed
Cec07g0695 Cec-Chr7:12291413 Cec01g0614 Cec-Chr1:6608904 1.10E-101 transposed
Cec01g0614 Cec-Chr1:6608904 Cec05g2569 Cec-Chr5:36661156 1.40E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0614 - - - 0.0