Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0644 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATCATCACTGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCAATCGCCGAGCTCAATCATTCGGCAACCAGTTCCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACAGCAGCCGCCGCCACTAGTTTCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCTCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGAAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATCAAGAAGAGGATGAAGAATATAATGATGATTGGAGATGGGATTGATAGGACGATCGTCACGGCCATGAAGAACGTCGAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGATCACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCAGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTAATTGAACCGGCCGGGTGGCTTCCTTGGGCTGGAGATTTCAGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGCAAATGGGCTATGA 1548 48.45 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIITDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSATSSMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSFSNSGGRRLLGGSFPKWVYNDDRMLLQGVVGNRSDMVVAQDGSGNFRTISEAVAAAEEARKGSERFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTIVTAMKNVEDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNEITGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFSLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVESFLEGGGWIPATGVPFANGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6986460 6988844 - CePI673135_01g006440.1 Cec01g0644 193861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0644 515 Gene3D - 198 515 IPR012334 -
Cec01g0644 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Cec01g0644 515 CDD PMEI-like_3 2 154 - -
Cec01g0644 515 PANTHER PECTINESTERASE 2 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cec01g0644 515 Pfam Pectinesterase 202 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cec01g0644 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Cec01g0644 515 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Cec01g0644 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Cec01g0644 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
Cec01g0644 515 SUPERFAMILY Pectin lyase-like 201 513 IPR011050 -
Cec01g0644 515 FunFam Pectinesterase 197 515 - -
Cec01g0644 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Cec01g0644 515 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0644 Cec-Chr1:6986460 Cec05g0879 Cec-Chr5:7607139 2.80E-127 dispersed
Cec01g0477 Cec-Chr1:4871421 Cec01g0644 Cec-Chr1:6986460 5.10E-137 transposed
Cec10g0587 Cec-Chr10:7643750 Cec01g0644 Cec-Chr1:6986460 1.10E-114 transposed
Cec01g0644 Cec-Chr1:6986460 Cec05g2426 Cec-Chr5:35492389 1.40E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0644 - - - 0.0