Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0650 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGTTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCCCCCGCTTGTGAATTCGATTGCCAGTGTTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCGAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAAGGAGCTGAAGATCCACCTACAAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACCTTCCAACAGAGGAAGAAATTAACCCATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTCATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAGACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAACTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCACTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCTGTCGGTGTTAAGCGGCGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATAATCGAACCACTCGTTAGCGGTTCAGCCGTGGCTCCTCCTGCACAAGTTTAA 1410 44.4 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKPPLVNSIASVQNRSDLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDLPTEEEINPLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYRLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRTQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTIAHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPAQV 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7106607 7110252 - CePI673135_01g006500.1 Cec01g0650 193867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0650 469 MobiDBLite consensus disorder prediction 15 100 - -
Cec01g0650 469 MobiDBLite consensus disorder prediction 68 85 - -
Cec01g0650 469 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Cec01g0650 469 Gene3D - 174 263 - -
Cec01g0650 469 FunFam UBX domain-containing protein 6 343 434 - -
Cec01g0650 469 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Cec01g0650 469 SUPERFAMILY PUG domain-like 177 240 IPR036339 -
Cec01g0650 469 MobiDBLite consensus disorder prediction 15 52 - -
Cec01g0650 469 Pfam PUB domain 179 252 IPR018997 -
Cec01g0650 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 460 - GO:0050832(PANTHER)
Cec01g0650 469 MobiDBLite consensus disorder prediction 53 67 - -
Cec01g0650 469 CDD PUB 167 263 - -
Cec01g0650 469 SMART PGNneu 180 247 - -
Cec01g0650 469 Gene3D - 343 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0650 Cec-Chr1:7106607 Cec11g1303 Cec-Chr11:27055331 7.60E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28870 PF09409 PUB 1.10E-16 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0650 K14011 - csv:101209321 818.535