Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0661 ATGTCTTCCCCATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCATTCGGCCCCCTCGCCCTTCTCTTGGGCCGCGCCACTGCCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATTGTTGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGACGGCTAGGGATATGGAGACGCAGCAGCAGCAGCAGTCTGATGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAACATGTCCGGTGTTGTGAAAAGATGCGAGTCAGTAAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTTGTGGCTGGTGGTAACATCCTCATGCAGAATGCCCCATCTTTATACTGGCTGGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGATATCGGTATCAAGTGTCCAATGAGCCTTCTCCAGGGGATGGGTTGATGGTTCCAGTAGAAACTAGCAGTAGATACTTGACGACTGAGCGTGTTCTATCACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATATGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAATATTGTAAAAAATTCTGAACCTGTGTAA 1068 48.88 MSSPSFPPSMEPPAQQIPLLPSRQPSNSDGSTSPFGPLALLLGRATARRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARTARDMETQQQQQSDGYVTNESDEEDGSPRNMSGVVKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLSREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNIVKNSEPV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7201385 7205186 - CePI673135_01g006610.1 Cec01g0661 193878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0661 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Cec01g0661 355 Pfam Ring finger domain 303 345 IPR001841 -
Cec01g0661 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 350 IPR013083 -
Cec01g0661 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Cec01g0661 355 SMART ring_2 304 344 IPR001841 -
Cec01g0661 355 MobiDBLite consensus disorder prediction 1 32 - -
Cec01g0661 355 CDD RING-H2_PA-TM-RING 303 345 - -
Cec01g0661 355 MobiDBLite consensus disorder prediction 138 166 - -
Cec01g0661 355 SUPERFAMILY RING/U-box 291 350 - -
Cec01g0661 355 MobiDBLite consensus disorder prediction 1 19 - -
Cec01g0661 355 PANTHER TARGET OF ERK KINASE MPK-1 43 349 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0661 Cec-Chr1:7201385 Cec10g0360 Cec-Chr10:4268197 9.30E-90 dispersed
Cec01g0661 Cec-Chr1:7201385 Cec07g1624 Cec-Chr7:31773142 6.10E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0661 - - - 0.0