Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0674 ATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCTGGAAACTCGAGCTTTAGGGTTCCTCAACCTGTCCCCGTGGTTCGCTTCCTCTACGAGCTCTGCTGGACCATGGTCCGAGGCGAATTGCCATTCCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCTCGTCTTTTAAAGTTGGCTAAGTGGCTGGTTGAATCTGCATTTGTCCCATTGAGGCTTTTTCAGGAGCGATGTGAGGAAGAATTTCTATGGGAGGCTGAAATGATAAAGATTAAGGCGCAAGAATTGAAAAATAAAGAGGTCAGAGTAAATACTCGTCTTCTTTATCAGCAAACAAAGTTTAATCTTCTGCGGGAGGAAAGTGAGGGCTATGCCAAGTTGGTAACACTTCTTTGCCGGGTCACTGATGCTTCAAATAATAATTTTCCAGGTTCAACAATTGGTATTATAAAGTCATTGATTGGGCATTTTGATCTGGACCCAAACCGTGTTTTTGACATTGTCTTGGAGTGTTTTGAACTGCAGCCAGAAAATAGTGTTTTTGTGGAGCTAATTCCAATATTTCCCAAGTCTCATGCTTCACAAATCCTCGGGTTCAAATTTCAGTACTATCAGCGTATTGAAGTAAATTCCCCAGTTCCATTTGGACTTTATAAGCTTACAGCGTTACTAGTGAAGGAAAAGTTCATTGATCTTGACAGCATATATGCGCATCTACTTCCCAAGGAGGATGAGGCATTTGAGCATTATGGTTCCTTTTCATCCAAACGACTTGATGAGGCTACCAGAATAGGTAAAATAAATCTTGCGGCAACTGGAAAGGATCTAATGGATGACGAAAAGCAAGGAGATGTAAGCATTGATCTTTTTGCTGCTCTAGACATGGAAAGTGAGGCAGTCAATGAAAGGTCTCCAGAGCTGGAAAATAATCAAACATTGGGCTTGCTTACTGGATTTCTTTCTGTGGGTGACTGGTGTCATGCACATGTACTGTTGGATCGGCTTTCACCTCTTAATCCAGTGGAACATCTTCCCATTTGTAACAGCTTGTTTAGGCTCATTGAAGAATCAATCTCCTCTGCATACTCTATTGTTCGTCAGAATCCTTATCAGAGCTTGGGGGTTTCTTCGGGAACTAGCATTGATACTATTGATACCACAAATTTGCCAGTTGGTGGTTCTTTTATAGATCTTCCGAGAGAACTTTTCCAGATGCTTGCTGCTGCTGGACCTTATCTCTATCGCGATACAATTCTGCTACAGAAGGTTTGTAGGGTGCTGAGAGGTTATTATTCATCGGCAATTGAGTTTGTCAACAGTGTGGAAATTGGTCCAAATCCTGAACTTGTTATGCCAGCTGGAAATCGGGTCCCTCATCTTCACTTAAAGGAAGCTAGGTTGAGGATTGAGGAAGCCTTAGGAACGTGCCTACTTCCTTCTTTACAGTTGATACCTGCCAATCCAGCTGTTGGTCAAGGAATATGGGAAGTAATGAATCTTCTTCCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAGAGAGATGATGAGAAGATTCCGATGGTTTTGGCTGCAAGGCAAACGGCAAAGTTGGACACACGGAGGATTTTAAAGCGGTTGGCTAAGGAGAACTTGAAGCAATTGGGTAGGATGGTTGCAAAACTTGCGCATGCTAATCCAATGACTGTCCTTCGGACAATCGTACACCAGATTGAGGCATATAGGGATATGATTACTCCGGTAGTAGATGCATTCAAGTATCTGACTCAGCTTGAGTATGACATATTGGAATATGTTGTGATTGAGCGTTTGGCGCAAGGAGGGCGTGATAAGTTGAAGGATGATGGCCTCAATCTCTCAGATTGGCTCCAATCATTAGCTTCATTTTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAACTAAGGGGTTTGTTTCAGTATCTCGTTAATCAATTGAAAAAAGGTCAAGGGATTGAGCTTGTTCTCCTGCAGGAACTTGTCCAACAAATGGCTAATGTCCAATACACAGAAAACCTAACTGAGGAGCAGTTGGATGCCATGGCAGGAAGTGAGACACTTCGTTTTCAAGCAACTTCTTTTGGAGTTACTCGAAATAACAAGGCGTTGATCAAGTCAAGCAACAGACTGCGTGACTCGTTGCTTCCTAAAGATGAACCAAAATTGGCAGCCCCTCTTTTGCTACTTATTGCTCAACACCGTTCATTGGTTGTTATAAATGCAGATGCTCCTTATATAAAGATGGTCAGTGAGCAGTTTGATAGATGTCATGGAACTTTGCTTCAATACGTGGAATTTCTTAGTAGTGCAGTTACACCTGCTTCGGCTTATGCTCAGTTGATTCCCTCACTCAAGGAGCTTGCCCATCTTTATCACCTAGATCCCGAGGTTGCTTTCCTGATTTATCGGCCAATAATGAGGCTATTTAAGTGTCAGGGTGGTTCTGATATCTTCTGGCCACTGGATGGAAATGATGCAAATGTTGTAGGCAATAATTCTGATCTAGAACCTGCAGAATGTTCTGCTGATGTCGTTTTGGAACTTGGTTCTTTACAGAAACCTGTGAGGTGGTCAGATCTGCTTGATACTGTGAAGTCTATGTTACCTCCAAAAGCTTGGAATAGCTTATCTCCAGATCTCTATACTACATTTTGGGGTCTCACTCTCTATGATCTTTATGTTCCTCGGAGTAGATATGAATCTGAAATTGCTAAGCAGCATTCTGCTCTTAAAGCTTTAGAAGAGCTCTCTGATAACTCAAGTTCTGCAATCAACAAAAGGAAGAAAGACAAAGAAAGAATTCAAGAATCTCTTGATCGCCTGTCCAATGAACTTGTTAAGCATGAAGAAAATGTTGCATCCGTTCGTAGACGACTTTCTCGTGAAAAGGATAAGTGGTTGAGCTCCTGTCCTGATACTCTGAAAATCAACATGGAGTTCCTTCAGCGTTGTATTTTTCCCCGCTGTACATTCAGTATGCCTGACGCTGTCTACTGTGCTATGTTTGTGCACACTCTTCATTCCCTTGGAACACCATTTTTCAATACAGTTAACCATATTGATGTTTTGATATGTAAAACCTTGCAACCCATGATATGCTGCTGTACGGAATATGAAGCAGGCAGGCTTGGAAGGTTTTTATATGAGACACTAAAAATAGCTTATCATTGGAAGAGTGATGAATCCATTTATGAACGTGAATGTGGAAATATGCCTGGATTCGCCGTCTATTATAGGTATCCAAATAGCCAAAGGGTAACGTACGGCCAGTTCATCAAGGTTCATTGGAAGTGGAGTCAAAGAATTACACGGTTACTGATACAGTGCTTGGAATCTACAGAATACATGGAAATTAGAAATGCTCTTATAATGTTAACAAAAATTTCCAATGTGTTTCCCGTCACTAGAAAGAGTGGGATCAACCTTGAGAAACGGGTTGCTAAGATCAAAAGCGATGAAAGAGAAGATCTGAAGGTTTTAGCTACTGGCGTTGCAGCAGCCTTGGCTGCTAGAAAGCCTTCGTGGGTTACAGATGAAGAATTTGGCATGGGTTACCTTGAATTAAAGACTGCACCACCTCTTGCATCAAAGCCTTCGGCTAGTAATTTAGCTGCTAGCCAAAATAATTCCATTTATCTTTCCCAAAATGAACCTGGTGGAGGGAAGACCACTACATTACCCATCCCAAATTCAGATTCTGGAAATATGGCCAAAGACCATTCATTAAGGTCAAGGACTTCTGATGTGAGAACGGATAAAATAGATGGTCTCTCTGTTCCAAAATCTGAGCTCGGGCATGGGAAACTCAAAGGCACATCATTGAATGGGCCAGATTCCCAGCCACTGGTGCCCTCAACTTCTGTGAATTCAGGATCGTTAAGAATGGTGGAAAGTCAGAAACCAGGTGATGACTTAAGTAGGACTTTGGATGAGGGCTCGTCAAAAGTTGTTCCAAAGTCCTCTTCTGAATCTGAGTTAAGAGTTTCAGCAAAACGATCAGCGCCTGTTGCGTCTCTCAATAAAGCACCAAAACAAGATATCACAAAAGATGAAATAAGATCAGGAAAAGCTGCTAGCAAGAATCCTGGGTCTTCAACAAGTGAAAGGGAGCTTCCAGTTCATGCAACAGACGGTGGTAGGCATGGAAGTTCTTCCAATGCACCTTCTTCCGTTATGCCAAATGGTAATACACAAAGTTCATTAACGAAAGGCTCGTCCTTATTAAAAGCTTCAGATGGCCACACTGTTGAATCGAAGACAGAGAGTGGGGTTGGGAGGACATCTGATGGTAGGGCTTCATCAGTAAAGGATGATGGCACAGAAGCTCTAGATGTTACGAGATCCTCTTCTTCCAGACTTGCTCATTCTCCCAGGCATGATAATTCTGCCAGTGGTTCTAGATCTAGTGATAAGCTGCAGAAAAGAGCTAGTCCTGCAGAAGAACCAGACAGACAAGGTAAACGCCGCAAAGGAGATGGTGAAATTAGGGATGTAGATGGGGATTTTCGTATCTCTGACAAAGATAGATCCATTGACCCACGATCTGTAGATGCTGATAAATTAGGAACGGATGAACTAAGTGGTTACAGAGGTTCAGACAAACCTTCAGATAGAACAAAAGATAAAGTAAATGAAAGGTATGATAGGGACTACAGAGACCGGGTTGAGCGCCCTGAAAAGTCCCGTGGAGATGATCCTTCAGTAGAAAAAACAAGAGACAGATCAATGGAAAGATATGGAAGAGAGCGCTCAGTTGAGAAAGTGGAGAGAGTTTCTGATAGGTATCCTGAAAAGTCTAAGGATGAGAGAAATAAAGATGATAGGAGCAAATTACGATATAGTGATTCAACTATGGACAAGTCTCATGTTGATGATCGGTTTCACGGACAGAGCTTGCCACCTCCGCCACCCTTGCCTCCGCACATGGTCCCTCAATCTGTTAATAGTGGGAGAAGAGAAGAAGATGTGGATAGGAGGTTTGGAACTACTAGACATGCCCAAAGGCTTTCTCCTAGACACGAAGAGAAGGAACGAAGACGATCAGAGGAAAATTTAATTTCACAGGATGATGCAAAACGCAGAAGAGAAGAGGAATTTCGAGAAAGGAAGAGAGAAGAGAGAGATGCTGGGATGTCATTGAAGGTGGATGATAGGGAGAGGGAGAGGGAGAAGGCAAACCTTTTGAAGGAGGACATGGATGCTTCTGGCGCCTCTAAGAGGCGAAAACTTAAAAGGGAGCATCTGTCATTAGCTGAGGCTGGTGAGTATTCTCCTGTTGGTCCACCACCACCTCCGATGGGTGGTGGTGTGTCTCAATCTTATGATGGTCGAGAAAGAGGAGACCGGAAGGGAGTAATGATGCAGCGTGCTGGCTACCTGGATGACCCAGGCTTGAGAATTCACGGTAAAGAAGTGGTCAACAAGATGACAAGACGTGAAGCTGATCTAATGTATGATCGAGAATGGGATGACGAAAAGAGAATGAGAGCAGATCAGAAGCGGAGGCATCGGAAATAA 5667 42.93 MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAKWLVESAFVPLRLFQERCEEEFLWEAEMIKIKAQELKNKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRVTDASNNNFPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILGFKFQYYQRIEVNSPVPFGLYKLTALLVKEKFIDLDSIYAHLLPKEDEAFEHYGSFSSKRLDEATRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTGFLSVGDWCHAHVLLDRLSPLNPVEHLPICNSLFRLIEESISSAYSIVRQNPYQSLGVSSGTSIDTIDTTNLPVGGSFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYSSAIEFVNSVEIGPNPELVMPAGNRVPHLHLKEARLRIEEALGTCLLPSLQLIPANPAVGQGIWEVMNLLPYEVRYRLYGEWERDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRFQATSFGVTRNNKALIKSSNRLRDSLLPKDEPKLAAPLLLLIAQHRSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLKELAHLYHLDPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNNSDLEPAECSADVVLELGSLQKPVRWSDLLDTVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPRSRYESEIAKQHSALKALEELSDNSSSAINKRKKDKERIQESLDRLSNELVKHEENVASVRRRLSREKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPPLASKPSASNLAASQNNSIYLSQNEPGGGKTTTLPIPNSDSGNMAKDHSLRSRTSDVRTDKIDGLSVPKSELGHGKLKGTSLNGPDSQPLVPSTSVNSGSLRMVESQKPGDDLSRTLDEGSSKVVPKSSSESELRVSAKRSAPVASLNKAPKQDITKDEIRSGKAASKNPGSSTSERELPVHATDGGRHGSSSNAPSSVMPNGNTQSSLTKGSSLLKASDGHTVESKTESGVGRTSDGRASSVKDDGTEALDVTRSSSSRLAHSPRHDNSASGSRSSDKLQKRASPAEEPDRQGKRRKGDGEIRDVDGDFRISDKDRSIDPRSVDADKLGTDELSGYRGSDKPSDRTKDKVNERYDRDYRDRVERPEKSRGDDPSVEKTRDRSMERYGRERSVEKVERVSDRYPEKSKDERNKDDRSKLRYSDSTMDKSHVDDRFHGQSLPPPPPLPPHMVPQSVNSGRREEDVDRRFGTTRHAQRLSPRHEEKERRRSEENLISQDDAKRRREEEFRERKREERDAGMSLKVDDREREREKANLLKEDMDASGASKRRKLKREHLSLAEAGEYSPVGPPPPPMGGGVSQSYDGRERGDRKGVMMQRAGYLDDPGLRIHGKEVVNKMTRREADLMYDREWDDEKRMRADQKRRHRK 1888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7352950 7377508 - CePI673135_01g006740.1 Cec01g0674 193891

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0674 1888 PANTHER THO2 PROTEIN 7 1863 IPR040007 GO:0000347(InterPro)|GO:0000445(PANTHER)|GO:0003729(PANTHER)|GO:0006397(InterPro)|GO:0006406(InterPro)|GO:0006406(PANTHER)
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1523 1677 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1494 1522 - -
Cec01g0674 1888 Coils Coil 1738 1758 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1698 1801 - -
Cec01g0674 1888 Coils Coil 946 966 - -
Cec01g0674 1888 Pfam Transcription- and export-related complex subunit 595 670 IPR021726 -
Cec01g0674 1888 Pfam THO complex subunit 2 N-terminus 429 593 IPR032302 -
Cec01g0674 1888 Pfam THO complex subunit 2 N-terminus 36 414 IPR032302 -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1429 1479 - -
Cec01g0674 1888 Pfam Transcription factor/nuclear export subunit protein 2 923 1218 IPR021418 -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1262 1287 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1862 1880 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1323 1346 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1288 1309 - -
Cec01g0674 1888 Coils Coil 974 1015 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1862 1888 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1363 1378 - -
Cec01g0674 1888 MobiDBLite consensus disorder prediction 1262 1830 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0674 K12879 - - csv:101221461 3457.54
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g529 . Blo16g00765 . Bda11g00196 Bpe13g00998 . . . . . . . . . . . Cpe01g01856 . . . . . . . . . . . . . . . . . . . Csa05g01969 . . . . . Bda11g00196 . . . Bma06g01140 . Cmo04g02231 Cmo15g00928 Cma04g02138 Cma15g00890 Car04g02075 Car15g00836 Cpe13g00426 . Bhi12g00962 . . . . . Lcy10g1597 Cla01g00652 Cam01g0681 Cec01g0674 Cco01g0701 Clacu01g0669 Cmu01g0642 Cre09g1863 Lsi09g00705 . Chy09g00805 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005299 1 1 2 1 1 1 2 1 1 1 1 1 3 1 1 3 1 2 2 1 2 1 1 1 1 1 1 2 1 1 40