Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0676 ATGAGATCCGAGCAATGTTGCCATGTCATTATCACAGAGATTTGCGACGGAGATTTTCGTCTTCCCTTTCCCACCAATTCGATTCTCTCTCCCACAGTGAAGAGAAAGCAAATAAAAATGAAAACCCAGAAGAAAATTTTGTTAATTTTGAGCTTTCCTGGTTCTGGGTCCATTTCAGTAAAAGGCACTCCAGATCGAGCTGTGGGGAGTTTCTTCTTCCTCCATCATCTCTGCAAATCATTGGTTGCATTTTGTATCTTTTTTGATACCCAGGTCAAATGGTGCTGTGACAATCTTCCTCTTGTCAACATTTTACTTTTCTGTTTAATTGCAGAAGAAAGTGTCAAAGGAATTTTCAGAAAGAAAGTGAGCTCAAGAATGTTGCTGAGTCTTCTTCAGCAGGGCAACAACGCTGTGGCTATGAAGTGTAACGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTGAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTATTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGCGAGCAGAGAGCAAGGATGTTGCAGGACCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTTGAAAAGCAACACGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCATATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACCTTTCCCGTTTACAAGTCCAAATTGCCATCTAAACCAACCGAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTGAACGTATATGATGTTACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCGTGGACTGCCCTGACTACAGCATTCTTATTCTTCGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAGATGAAAAAACTGAAATTTCGCGCGGAGGCTGCTGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCCAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCGTTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGTGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCATTCTAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATCGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGACCAGAACAGCTGGGATAACTTCAAACATCTGATTGCTGATGAGGACTTCCAGTTGAATGGCACTCCAAACAACATGGTAGTTTCCAAGGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCTTACATGCCCAAAATCGAGTTTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGCAATTATGGGGGGACTGGTATTGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTCTAGGAAAATGTAAGAAGAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTGACCAGATATCATTTGAAGAGACTTGGTGTTATAGTTGAAGTCACCAGTACCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAGTGCCAGGAAACTCAATCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTAAAGTCCGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGTATTTCGTTTAAGTTACCAAAGCTAATCCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAACAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTAAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACAGGGAAGGGGCCTACCGAACGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAACAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTTGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTTATCAGGATGATGGAGAACAAGGCAAATGAAGGAGGACCGTCTGCAGCAGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGATGAATGCCTGAAATGCGGAATGGATGGCTACGTGAAAAGAGCCGGAAGCAAAATCTCCATTGCAGACCTCTTTGATGGTGGGTTGGAAGTACCAGCAAGTTTTGACACCATTGCTGGTGCTAACTGTCTTCTTGCTTCGACGAGAGCGTCGGGAATTCTTGACTGGCATTGA 3426 42.97 MRSEQCCHVIITEICDGDFRLPFPTNSILSPTVKRKQIKMKTQKKILLILSFPGSGSISVKGTPDRAVGSFFFLHHLCKSLVAFCIFFDTQVKWCCDNLPLVNILLFCLIAEESVKGIFRKKVSSRMLLSLLQQGNNAVAMKCNEQMGTTKKGYTFVEANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTEEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMKKLKFRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKCLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGREFQTLSGCEAADDQNSWDNFKHLIADEDFQLNGTPNNMVVSKEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGVIVEVTSTINMAASLCRENGSTVPGNSILPDMILVEKDTLKSDEECGIIHQLNWKLNGISFKLPKLILLATNITTAELDKARTAGFADTVIMKPLRASMVAACLQQVLGVKNQRQGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKANEGGPSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVKRAGSKISIADLFDGGLEVPASFDTIAGANCLLASTRASGILDWH 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7406921 7414673 - CePI673135_01g006760.1 Cec01g0676 193893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0676 1141 SMART CHASE_2 235 420 IPR006189 -
Cec01g0676 1141 SMART HisKA_10 508 573 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec01g0676 1141 SUPERFAMILY CheY-like 823 960 IPR011006 -
Cec01g0676 1141 Pfam Response regulator receiver domain 985 1097 IPR001789 GO:0000160(InterPro)
Cec01g0676 1141 SMART HKATPase_4 620 803 IPR003594 -
Cec01g0676 1141 ProSiteProfiles Response regulatory domain profile. 984 1113 IPR001789 GO:0000160(InterPro)
Cec01g0676 1141 Gene3D - 975 1109 - -
Cec01g0676 1141 Pfam His Kinase A (phospho-acceptor) domain 508 573 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec01g0676 1141 SMART REC_2 983 1109 IPR001789 GO:0000160(InterPro)
Cec01g0676 1141 CDD REC_hyHK_CKI1_RcsC-like 985 1110 - -
Cec01g0676 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 726 798 IPR003594 -
Cec01g0676 1141 Gene3D - 186 238 - -
Cec01g0676 1141 ProSiteProfiles CHASE domain profile. 235 447 IPR006189 -
Cec01g0676 1141 ProSiteProfiles Response regulatory domain profile. 828 958 IPR001789 GO:0000160(InterPro)
Cec01g0676 1141 Gene3D CHASE domain 239 454 IPR042240 -
Cec01g0676 1141 CDD HisKA 508 569 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec01g0676 1141 SUPERFAMILY CheY-like 982 1097 IPR011006 -
Cec01g0676 1141 ProSiteProfiles Histidine kinase domain profile. 515 803 IPR005467 -
Cec01g0676 1141 PANTHER TWO-COMPONENT HISTIDINE KINASE 160 1096 IPR050956 -
Cec01g0676 1141 CDD HATPase_EvgS-ArcB-TorS-like 625 801 - -
Cec01g0676 1141 FunFam Histidine kinase 4 239 454 - -
Cec01g0676 1141 PRINTS Bacterial sensor protein C-terminal signature 746 756 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec01g0676 1141 PRINTS Bacterial sensor protein C-terminal signature 787 800 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec01g0676 1141 PRINTS Bacterial sensor protein C-terminal signature 728 742 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec01g0676 1141 PRINTS Bacterial sensor protein C-terminal signature 763 781 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cec01g0676 1141 Gene3D - 572 806 IPR036890 -
Cec01g0676 1141 FunFam Histidine kinase 4 480 571 - -
Cec01g0676 1141 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 574 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cec01g0676 1141 Pfam CHASE domain 238 418 IPR006189 -
Cec01g0676 1141 Gene3D - 481 571 - -
Cec01g0676 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 562 798 IPR036890 -
Cec01g0676 1141 Coils Coil 558 578 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0676 Cec-Chr1:7406921 Cec11g0114 Cec-Chr11:1363374 0.00E+00 dispersed
Cec01g0676 Cec-Chr1:7406921 Cec02g0285 Cec-Chr2:2629811 4.70E-276 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28873 PF02518 HATPase_c 2.50E-31 CL0025 Cec TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0676 K14489 - csv:101209777 1814.66