Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0701 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCAAGGCTGAATCTAGCCTCCTTCGTCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAGGCGGAAAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCGGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGAAGAGCATCAATGTGAGCGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTGATTTGGAGAACCAAACAAGATCTCCCCCAAGAACTCATTTTCCATATCAATTACCTTGGAGCGGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCGCAGTATTACCAACTAATCCGATTGGGTTTCGAGGGATATCGGAATGTGATGCAAAATTGTCACGACAATGCAATGGTGCTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCGGTGGTGGCGTTCTCCCTCAAAGACCGGAGCCGGCACGACGAGTTTGAGGTATCGGAGATGTTGCGGCGGTTTGGGTGGATTGTGCCGGCGTATCCAATGCCGGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTCTCTCGCACGCTTGCGGAGCGGCTTGTGCTTGATATTGTAAAGGTTTTGGCTGAGTTAGATACTCTTCCACCAAAGAATGGTGGAAATGAAACGGGTGGAAAGAAGAGGGTAGAGGAAACAGAGAGGGAAATAGCGACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAAGCTTGCTGCTAATCAAGATGGTCCTTCAGTTACCGTCATTGCCAACCCATGTGGTGATATTTATAGGAATCACTTTGTTTCTCCGAATTATCTTTCTTATTATTGCAATCTTTCTGATCGGAGAAATAGCGAAATGGGTTCTCAGGAAGACGACCGAGCAATCTTGGAGGAGGGTCTTTTGCAGAATGAAAGCAATGGACTGTATACAGGCGATGGCTCAGTTGACTTCCATGGGAATCCTGTTCTCAAGCAAAATACAGGAAACTGGAAAGCATGCCCATTCATTCTAGGGAATGAAGGCTGTGAGAGATTGGCCTACTATGGGATTTCAACTAACCTTGTTACTTATCTTACAAATAAACTACATCAAGGAAATGTATCAGCTGCTAGAAACGTCACTACTTGGCAAGGAACTTGTTATCTTACACCCCTTATTGGAGCTATATTGGCAGATGCATACTGGGGAAGATATTGGACAATTGCTGCTTTTTCAACAATTTATTTCATTGGAATGTGTACATTAACTCTCTCTGCGTCTGTTCCTGCTCTAAAGCCTGCTGAATGTGTTGGGTTTATGTGCCCCCCAGCTTCTTCTGCTCAGTATATTGTATTTTTCCTTGGACTCTATTTGATTGCCCTTGGGACCGGTGGAATCAAACCATGTGTGTCATCCTTTGGAGCAGATCAGTTTGATGATACTGATCCTGCCGAAAGGGTTAAAAAGGGCTCATTTTTCAACTGGTTTTACTTTTCAATCAATATTGGTGCTCTTATATCAAGTAGTTTCCTGGTTTGGATACAAGACAATGCCGGGTGGGGTCTAGGGTTTGGCATCCCTGCATTATTTATGGGCCTTGCTATTATAAGTTTCTTTTCTGGCACAAAACTCTACAGATTTCAGAAACCGGGAGGAAGCCCAATTACAAGAATGTGCCAGGTTTTGGTTGCATCCTTCCATAAACGAGATCTAAGGATTCCTGGTGACAGTAATCTTCTGTATGAGGTGCAAGACAAAAGTTCTGCCATTGAAGGAAGTCGCAAGCTGGAACACAGTGATGAACTGAGATGCCTAGATAAAGCGGCTGTCATCTCTGATGCTGAGTTGAAAAACGGGGACTTCTCCAACCCCTGGAGGCTTTGCACAGTAACTCAGGTCGAGGAATTCAAGATTCTAATCCGAATGTTCCCAATATGGGCTACTGGAATCGTCTTTGCTGCCGTATATGCTCAAATGTCAACATTATTCGTTGAACAAGGAACAATGCTGGACAAGACCATTGGTTCTTTCCGCATTCCTCCAGCCTCTCTCTCAACCTTCGATGTAGTAAGTGTTATTTTCTGGGTACCTGTATATGATAGAGTCATAGTCCCAATTGCAAGAAAAGTCACAGGAAAGGAGAGGGGATTCACCGAAATACAGCGGATGGGTATTGGCCTGTTCATATCGGTTTTATGCATGTCAGCTGCAGCCGTGGTAGAGATCAAACGACTGGAACTTGCAAGAGAACTTGATTTGGTGCATAAACCAGAGGCTGTACCACTAAGCATACTTTGGCAAATACCACAATATTTCTTGCTGGGCGCAGCAGAAGTATGCACATTCATTGGGCAGCTTGAGTTTTTCTATGATCAATCTCCAGATGCCATGAGGAGTTTGTGTAGTGCATTGTCTCTATTGACCACTGCTTTGGGGAATTACCTCAGTTCCTTCATTCTAACCATTGTCACTTACTTTACAACAAGAAATGGGCAGCCTGGGTGGATACCAGATAACTTAAATGAGGGCCATTTGGATTTCTTCTTCTGGCTGTTGGCTGGACTGAGCTTCTTGAACTTGTTGGTTTATATTATTGTGCCCCTACCCTCCCCCGATTCCAAATATGATGTCGCACCTTCCCTCATCGTCAAATCCCAATCTCTAGTTCGTGTAGTTCTTCTGGCTCTTTCGCTTGCATCGTGTAGATTCATCGCTCTCGCTCCCCTTTGTCTGGATTCGTCGTCACCCAATTTGTACCGTCGACTGCATCATCCCTGCCTAATCGTGCGCCCATCCATTCGCCATTCCACTCAGCGCCACAACAGATCCTCCTCCACTCAGATTCAATACAAAACAAGCCTAGATCCAAGTTTATTTGTTCAGACTTCACGTTTTTTGCTCAGATCTCATGTCGTGGACTTTTCACCTCTACTCATGGGTTCCTCGCATCTCCGTCTTTGTTCAGAACTTGTGCTTTCGTTTTTAGTTTCACATTGGTTCATCAGACCAATTTGGTTCATTTAG 3729 46.15 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKAYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKRVEETEREIATYWRNITKARKIKLAANQDGPSVTVIANPCGDIYRNHFVSPNYLSYYCNLSDRRNSEMGSQEDDRAILEEGLLQNESNGLYTGDGSVDFHGNPVLKQNTGNWKACPFILGNEGCERLAYYGISTNLVTYLTNKLHQGNVSAARNVTTWQGTCYLTPLIGAILADAYWGRYWTIAAFSTIYFIGMCTLTLSASVPALKPAECVGFMCPPASSAQYIVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPAERVKKGSFFNWFYFSINIGALISSSFLVWIQDNAGWGLGFGIPALFMGLAIISFFSGTKLYRFQKPGGSPITRMCQVLVASFHKRDLRIPGDSNLLYEVQDKSSAIEGSRKLEHSDELRCLDKAAVISDAELKNGDFSNPWRLCTVTQVEEFKILIRMFPIWATGIVFAAVYAQMSTLFVEQGTMLDKTIGSFRIPPASLSTFDVVSVIFWVPVYDRVIVPIARKVTGKERGFTEIQRMGIGLFISVLCMSAAAVVEIKRLELARELDLVHKPEAVPLSILWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSFILTIVTYFTTRNGQPGWIPDNLNEGHLDFFFWLLAGLSFLNLLVYIIVPLPSPDSKYDVAPSLIVKSQSLVRVVLLALSLASCRFIALAPLCLDSSSPNLYRRLHHPCLIVRPSIRHSTQRHNRSSSTQIQYKTSLDPSLFVQTSRFLLRSHVVDFSPLLMGSSHLRLCSELVLSFLVSHWFIRPIWFI 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7823502 7836449 + CePI673135_01g007010.1 Cec01g0701 193918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0701 1242 CDD MFS_NPF8 572 1101 - -
Cec01g0701 1242 Gene3D - 361 448 - -
Cec01g0701 1242 CDD DOPA_deC_like 59 439 - -
Cec01g0701 1242 FunFam Glutamate decarboxylase 66 360 - -
Cec01g0701 1242 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 2. 728 740 IPR018456 GO:0006857(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec01g0701 1242 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cec01g0701 1242 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 629 653 IPR018456 GO:0006857(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec01g0701 1242 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cec01g0701 1242 Gene3D MFS general substrate transporter like domains 544 1103 IPR036259 -
Cec01g0701 1242 FunFam Glutamate decarboxylase 1 65 - -
Cec01g0701 1242 Pfam POT family 640 1071 IPR000109 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cec01g0701 1242 SUPERFAMILY MFS general substrate transporter 567 1102 IPR036259 -
Cec01g0701 1242 Gene3D - 1 65 - -
Cec01g0701 1242 Gene3D - 66 360 IPR015421 -
Cec01g0701 1242 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cec01g0701 1242 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cec01g0701 1242 FunFam Glutamate decarboxylase 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0701 Cec-Chr1:7823502 Cec01g0872 Cec-Chr1:10033264 2.10E-242 dispersed
Cec01g0699 Cec-Chr1:7804997 Cec01g0701 Cec-Chr1:7823502 8.40E-286 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0701 K14638 - csv:101212257 1113.98