Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0768 ATGAAGCTGATTGATTGTCTGCTGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCGGAGGCAGCAGTTGCAGCAGCTAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCTGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGACACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGAATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAACATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCTCAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACAGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGGCAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGAAAGACAAAGTGCCTTCCAATGA 1392 46.34 MKLIDCLLTPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHLPQNTFNSPDTKQFQSLKDKIIKLNSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNSSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKAKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWERQSAFQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8444350 8447265 + CePI673135_01g007680.1 Cec01g0768 193985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0768 463 SMART iq_5 117 139 IPR000048 GO:0005515(InterPro)
Cec01g0768 463 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515(InterPro)
Cec01g0768 463 PANTHER IQ-DOMAIN 5-RELATED 18 397 - -
Cec01g0768 463 ProSiteProfiles IQ motif profile. 118 146 - -
Cec01g0768 463 ProSiteProfiles IQ motif profile. 142 169 - -
Cec01g0768 463 MobiDBLite consensus disorder prediction 411 463 - -
Cec01g0768 463 MobiDBLite consensus disorder prediction 292 353 - -
Cec01g0768 463 MobiDBLite consensus disorder prediction 368 393 - -
Cec01g0768 463 Pfam Protein of unknown function (DUF4005) 344 423 IPR025064 -
Cec01g0768 463 MobiDBLite consensus disorder prediction 296 316 - -
Cec01g0768 463 Gene3D - 119 168 - -
Cec01g0768 463 MobiDBLite consensus disorder prediction 435 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0768 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0768 Cec-Chr1:8444350 Cec09g2145 Cec-Chr9:38401423 3.80E-27 dispersed
Cec01g0768 Cec-Chr1:8444350 Cec04g1024 Cec-Chr4:29828467 3.10E-21 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec09g2145 . 1 473 IQD Protein Family AT3G52290 54.7 6.1e-104 374.8
Cec05g2305 . 1779 1988 IQD Protein Family AT2G26410 50.2 2.8e-42 170.2
Cec03g1235 . 50 457 IQD Protein Family AT3G22190 57.8 1.4e-97 353.6
Cec05g1978 . 1 438 IQD Protein Family AT2G26180 62.0 1.8e-121 433.0
Cec04g2056 . 49 322 IQD Protein Family AT2G33990 52.1 7.2e-63 237.7
Cec07g1090 . 133 316 IQD Protein Family AT2G33990 54.0 1.7e-48 189.9
Cec04g2056 . 49 270 IQD Protein Family AT3G15050 50.5 5.4e-55 211.5
Cec07g1090 . 136 309 IQD Protein Family AT3G15050 62.1 3.5e-54 208.8
Cec01g0768 . 111 463 IQD Protein Family AT5G13460 50.4 1.6e-75 280.4
Cec06g0277 . 1 508 IQD Protein Family AT4G00820 50.9 2.1e-114 409.8
Cec05g0021 . 1 455 IQD Protein Family AT4G00820 50.5 1.3e-103 374.0
Cec06g0277 . 1 508 IQD Protein Family AT1G01110 50.2 3.2e-110 396.0
Cec09g0022 . 1 402 IQD Protein Family AT3G16490 50.1 2.7e-66 249.6
Cec03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 6.6e-65 245.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35