Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0783 | ATGGATACGTTTTGCGAGAAGAGAAGAAGCCATGGGCAGAATCATGTGAATCTAGGATATTCATTTCATTCCTCATTTTGTAAACCTATTGCTCCATTCTTTCATGATTTGCGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCAAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGACGAGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTAGCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACAATTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATCGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTATCGATTCCCGAGCATATCCCTCCGCTAAAGCTGCTTGTCTATGATAAGGACACATTTTCAACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCGACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG | 1374 | 43.09 | MDTFCEKRRSHGQNHVNLGYSFHSSFCKPIAPFFHDLRARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLTSMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSSDNSFSKRSSSCSQSSNNSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDSDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ | 457 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8621012 | 8633673 | + | CePI673135_01g007830.1 | Cec01g0783 | 194000 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0783 | 457 | MobiDBLite | consensus disorder prediction | 221 | 287 | - | - | |
Cec01g0783 | 457 | MobiDBLite | consensus disorder prediction | 221 | 245 | - | - | |
Cec01g0783 | 457 | Gene3D | Arf GTPase activating protein | 83 | 225 | IPR038508 | - | |
Cec01g0783 | 457 | FunFam | ADP-ribosylation factor GTPase-activating protein AGD12 | 299 | 457 | - | - | |
Cec01g0783 | 457 | SMART | C2_3c | 302 | 397 | IPR000008 | - | |
Cec01g0783 | 457 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 102 | 224 | IPR001164 | GO:0005096(InterPro) | |
Cec01g0783 | 457 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 102 | 218 | IPR037278 | - | |
Cec01g0783 | 457 | CDD | C2_ArfGAP | 300 | 444 | - | - | |
Cec01g0783 | 457 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 298 | 392 | IPR035892 | - | |
Cec01g0783 | 457 | CDD | ArfGap | 105 | 211 | - | - | |
Cec01g0783 | 457 | ProSiteProfiles | C2 domain profile. | 282 | 399 | IPR000008 | - | |
Cec01g0783 | 457 | SMART | arf_gap_3 | 102 | 225 | IPR001164 | GO:0005096(InterPro) | |
Cec01g0783 | 457 | PRINTS | HIV Rev interacting protein signature | 154 | 175 | IPR001164 | GO:0005096(InterPro) | |
Cec01g0783 | 457 | PRINTS | HIV Rev interacting protein signature | 114 | 133 | IPR001164 | GO:0005096(InterPro) | |
Cec01g0783 | 457 | PRINTS | HIV Rev interacting protein signature | 133 | 150 | IPR001164 | GO:0005096(InterPro) | |
Cec01g0783 | 457 | MobiDBLite | consensus disorder prediction | 269 | 284 | - | - | |
Cec01g0783 | 457 | FunFam | stromal membrane-associated protein 1 isoform X1 | 86 | 222 | - | - | |
Cec01g0783 | 457 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 92 | 457 | IPR044518 | GO:0005096(InterPro)|GO:0005543(InterPro) | |
Cec01g0783 | 457 | Pfam | C2 domain | 302 | 390 | IPR000008 | - | |
Cec01g0783 | 457 | Gene3D | C2 domain | 300 | 454 | IPR035892 | - | |
Cec01g0783 | 457 | Pfam | Putative GTPase activating protein for Arf | 103 | 218 | IPR001164 | GO:0005096(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0783 | Cec-Chr1:8621012 | Cec05g2910 | Cec-Chr5:39200129 | 1.40E-138 | dispersed | |
Cec01g0783 | Cec-Chr1:8621012 | Cec04g2223 | Cec-Chr4:40002986 | 6.30E-91 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0783 | K12486 | - | csv:101215531 | 742.265 |