Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec01g0821 | ATGGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCGCCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAGTGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTTGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAATAGAAAGCAAAGTGGAAGCTTGGCGGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAACTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA | 1797 | 45.24 | MVSLSPSRLFPLPAQRRRLSPFSAAASLRSAPPPLSVQRRRLLSPFSAVASLLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA | 598 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9131047 | 9141068 | + | CePI673135_01g008210.1 | Cec01g0821 | 194038 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec01g0821 | 598 | CDD | V-ATPase_C | 227 | 595 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cec01g0821 | 598 | Gene3D | - | 60 | 140 | IPR036898 | - | |
| Cec01g0821 | 598 | Gene3D | - | 385 | 473 | - | - | |
| Cec01g0821 | 598 | FunFam | V-type proton ATPase subunit C | 385 | 473 | - | - | |
| Cec01g0821 | 598 | SUPERFAMILY | Nucleic acid-binding proteins | 138 | 220 | IPR012340 | - | |
| Cec01g0821 | 598 | Gene3D | - | 263 | 534 | - | - | |
| Cec01g0821 | 598 | Pfam | SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 | 68 | 124 | IPR005576 | GO:0006351(InterPro) | |
| Cec01g0821 | 598 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 228 | 556 | - | - | |
| Cec01g0821 | 598 | Pfam | S1 RNA binding domain | 139 | 216 | IPR003029 | GO:0003676(InterPro) | |
| Cec01g0821 | 598 | Gene3D | - | 141 | 227 | IPR012340 | - | |
| Cec01g0821 | 598 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 223 | 597 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| Cec01g0821 | 598 | CDD | S1_RNAPII_Rpb7 | 141 | 216 | - | - | |
| Cec01g0821 | 598 | FunFam | DNA-directed RNA polymerase II subunit RPB7 | 61 | 140 | - | - | |
| Cec01g0821 | 598 | FunFam | DNA-directed RNA polymerase II subunit RPB7 | 141 | 226 | - | - | |
| Cec01g0821 | 598 | CDD | RNAP_II_Rpb7_N | 62 | 141 | - | - | |
| Cec01g0821 | 598 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 223 | 597 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro) | |
| Cec01g0821 | 598 | SUPERFAMILY | N-terminal, heterodimerisation domain of RBP7 (RpoE) | 61 | 138 | IPR036898 | - | |
| Cec01g0821 | 598 | Pfam | V-ATPase subunit C | 227 | 591 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec01g0821 | K02148 | - | - | csv:101221574 | 711.449 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Cec08g1722 | . | 1 | 1030 | Primary Pumps ATPases(2) | AT1G10130 | 80.0 | 0.0e+00 | 1600.9 | |
| Cec02g2193 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.9 | |
| Cec08g1506 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.8 | 4.8e-299 | 1023.8 | |
| Cec02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 4.3e-292 | 1000.7 | |
| Cec02g0507 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1232.6 | |
| Cec08g1506 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.3 | 0.0e+00 | 1189.1 | |
| Cec02g2193 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 1.1e-298 | 1022.7 | |
| Cec02g0507 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.8 | 0.0e+00 | 1233.0 | |
| Cec08g1506 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.8 | 0.0e+00 | 1185.2 | |
| Cec02g2193 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 1.2e-297 | 1019.2 | |
| Cec08g1497 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cec11g1625 | . | 85 | 222 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cec08g1496 | . | 2113 | 2244 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 2.4e-57 | 218.4 | |
| Cec08g1497 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cec11g1625 | . | 59 | 222 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cec08g1496 | . | 2087 | 2244 | Primary Pumps ATPases(2) | AT1G75630 | 80.7 | 2.5e-63 | 238.8 | |
| Cec08g1497 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec11g1625 | . | 60 | 222 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec08g1496 | . | 2088 | 2244 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 7.6e-71 | 263.5 | |
| Cec11g1625 | . | 58 | 179 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cec08g1496 | . | 2086 | 2207 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cec08g1497 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cec08g1339 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cec05g1886 | . | 4 | 161 | Primary Pumps ATPases(2) | AT2G25610 | 76.6 | 5.3e-54 | 208.0 | |
| Cec08g1497 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cec11g1625 | . | 85 | 222 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cec08g1496 | . | 2113 | 2244 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 6.9e-57 | 216.9 | |
| Cec08g1339 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cec05g1886 | . | 11 | 161 | Primary Pumps ATPases(2) | AT4G32530 | 71.3 | 4.0e-56 | 214.9 | |
| Cec03g0176 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1667.1 | |
| Cec03g0176 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.1 | 0.0e+00 | 1667.5 | |
| Cec08g1722 | . | 1 | 1030 | Primary Pumps ATPases(2) | AT1G10130 | 80.0 | 0.0e+00 | 1600.9 | |
| Cec03g0176 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.5 | 0.0e+00 | 1317.8 | |
| Cec02g0413 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 95.9 | 1.3e-267 | 918.7 | |
| Cec01g0821 | . | 223 | 598 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 1.1e-181 | 632.9 | |
| Cec09g2323 | . | 992 | 1252 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 5.9e-118 | 420.6 | |
| Cec10g1657 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.2 | 7.5e-206 | 713.4 | |
| Cec08g1497 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec11g1625 | . | 60 | 222 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec08g1496 | . | 2088 | 2244 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 7.6e-71 | 263.5 | |
| Cec02g0413 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 8.2e-270 | 926.0 | |
| Cec05g1560 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.5 | 1.9e-65 | 245.7 | |
| Cec02g0413 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.6 | 2.7e-265 | 911.0 | |
| Cec02g2193 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.9 | |
| Cec08g1506 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.8 | 4.8e-299 | 1023.8 | |
| Cec02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 4.3e-292 | 1000.7 | |
| Cec10g1502 | . | 100 | 441 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Cec05g1560 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 1.2e-90 | 329.7 | |
| Cec09g0167 | . | 1 | 623 | Primary Pumps ATPases(2) | AT1G78900 | 93.1 | 0.0e+00 | 1170.2 | |
| Cec02g0413 | . | 6 | 488 | Primary Pumps ATPases(2) | AT1G76030 | 95.9 | 1.3e-267 | 918.7 | |
| Cec02g0413 | . | 1 | 488 | Primary Pumps ATPases(2) | AT4G38510 | 95.7 | 8.2e-270 | 926.0 | |
| Cec02g0413 | . | 9 | 488 | Primary Pumps ATPases(2) | AT1G20260 | 95.6 | 2.7e-265 | 911.0 | |
| Cec01g0821 | . | 223 | 598 | Primary Pumps ATPases(2) | AT1G12840 | 83.5 | 1.1e-181 | 632.9 | |
| Cec09g2323 | . | 992 | 1252 | Primary Pumps ATPases(2) | AT3G58730 | 82.4 | 5.9e-118 | 420.6 | |
| Cec05g1560 | . | 1 | 229 | Primary Pumps ATPases(2) | AT4G11150 | 77.0 | 1.2e-90 | 329.7 | |
| Cec05g1560 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 6.6e-76 | 280.8 | |
| Cec05g1560 | . | 1 | 182 | Primary Pumps ATPases(2) | AT1G64200 | 73.5 | 1.9e-65 | 245.7 | |
| Cec10g1657 | . | 3 | 454 | Primary Pumps ATPases(2) | AT3G42050 | 79.2 | 7.5e-206 | 713.4 | |
| Cec02g2193 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 81.5 | 0.0e+00 | 1343.9 | |
| Cec08g1506 | . | 1 | 802 | Primary Pumps ATPases(2) | AT2G28520 | 63.8 | 4.8e-299 | 1023.8 | |
| Cec02g0507 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.8 | 4.3e-292 | 1000.7 | |
| Cec02g0507 | . | 6 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 75.7 | 0.0e+00 | 1232.6 | |
| Cec08g1506 | . | 1 | 807 | Primary Pumps ATPases(2) | AT2G21410 | 73.3 | 0.0e+00 | 1189.1 | |
| Cec02g2193 | . | 9 | 818 | Primary Pumps ATPases(2) | AT2G21410 | 62.5 | 1.1e-298 | 1022.7 | |
| Cec02g0507 | . | 8 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 76.8 | 0.0e+00 | 1233.0 | |
| Cec08g1506 | . | 1 | 807 | Primary Pumps ATPases(2) | AT4G39080 | 73.8 | 0.0e+00 | 1185.2 | |
| Cec02g2193 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.4 | 1.2e-297 | 1019.2 | |
| Cec08g1497 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cec11g1625 | . | 85 | 222 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.4e-60 | 229.2 | |
| Cec08g1496 | . | 2113 | 2244 | Primary Pumps ATPases(2) | AT4G34720 | 100.0 | 2.4e-57 | 218.4 | |
| Cec11g1625 | . | 58 | 179 | Primary Pumps ATPases(2) | AT1G19910 | 99.2 | 5.4e-53 | 203.8 | |
| Cec08g1496 | . | 2086 | 2207 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cec08g1497 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.2e-52 | 202.6 | |
| Cec08g1497 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cec11g1625 | . | 85 | 222 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.9e-60 | 227.6 | |
| Cec08g1496 | . | 2113 | 2244 | Primary Pumps ATPases(2) | AT4G38920 | 100.0 | 6.9e-57 | 216.9 | |
| Cec08g1497 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.4e-66 | 249.6 | |
| Cec11g1625 | . | 59 | 222 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 3.1e-66 | 248.4 | |
| Cec08g1496 | . | 2087 | 2244 | Primary Pumps ATPases(2) | AT1G75630 | 80.7 | 2.5e-63 | 238.8 | |
| Cec08g1497 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec11g1625 | . | 60 | 222 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.3e-74 | 274.2 | |
| Cec08g1496 | . | 2088 | 2244 | Primary Pumps ATPases(2) | AT2G16510 | 100.0 | 7.6e-71 | 263.5 | |
| Cec08g1339 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 1.5e-71 | 266.2 | |
| Cec05g1886 | . | 11 | 161 | Primary Pumps ATPases(2) | AT4G32530 | 71.3 | 4.0e-56 | 214.9 | |
| Cec08g1339 | . | 4 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 84.2 | 3.1e-70 | 261.9 | |
| Cec05g1886 | . | 4 | 161 | Primary Pumps ATPases(2) | AT2G25610 | 76.6 | 5.3e-54 | 208.0 | |
| Cec10g1502 | . | 100 | 441 | Primary Pumps ATPases(2) | AT3G28710 | 95.0 | 2.3e-194 | 674.9 | |
| Cec10g1502 | . | 100 | 441 | Primary Pumps ATPases(2) | AT3G28715 | 92.7 | 2.7e-187 | 651.4 | |
| Cec03g0176 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07810 | 80.3 | 0.0e+00 | 1667.1 | |
| Cec03g0176 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 65.5 | 0.0e+00 | 1317.8 | |
| Cec08g1722 | . | 1 | 1030 | Primary Pumps ATPases(2) | AT1G10130 | 80.0 | 0.0e+00 | 1600.9 | |
| Cec03g0176 | . | 1 | 1065 | Primary Pumps ATPases(2) | AT1G07670 | 80.1 | 0.0e+00 | 1667.5 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007861 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 36 |