Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0821 ATGGTTTCACTCTCACCTTCTCGCCTTTTCCCTCTCCCTGCTCAGCGCCGCCGTCTCTCTCCGTTCAGCGCCGCCGCCTCTCTCCGTTCAGCGCCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCCTCTCTCCGTTCAGCGCCGTCGCCTCCCTCCTACCGGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTGGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTTGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAGTGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCCTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTTGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAATAGAAAGCAAAGTGGAAGCTTGGCGGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAACTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1797 45.24 MVSLSPSRLFPLPAQRRRLSPFSAAASLRSAPPPLSVQRRRLLSPFSAVASLLPVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9131047 9141068 + CePI673135_01g008210.1 Cec01g0821 194038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0821 598 CDD V-ATPase_C 227 595 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cec01g0821 598 Gene3D - 60 140 IPR036898 -
Cec01g0821 598 Gene3D - 385 473 - -
Cec01g0821 598 FunFam V-type proton ATPase subunit C 385 473 - -
Cec01g0821 598 SUPERFAMILY Nucleic acid-binding proteins 138 220 IPR012340 -
Cec01g0821 598 Gene3D - 263 534 - -
Cec01g0821 598 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 68 124 IPR005576 GO:0006351(InterPro)
Cec01g0821 598 Gene3D Vacuolar atp synthase subunit c; domain 1 228 556 - -
Cec01g0821 598 Pfam S1 RNA binding domain 139 216 IPR003029 GO:0003676(InterPro)
Cec01g0821 598 Gene3D - 141 227 IPR012340 -
Cec01g0821 598 SUPERFAMILY Vacuolar ATP synthase subunit C 223 597 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cec01g0821 598 CDD S1_RNAPII_Rpb7 141 216 - -
Cec01g0821 598 FunFam DNA-directed RNA polymerase II subunit RPB7 61 140 - -
Cec01g0821 598 FunFam DNA-directed RNA polymerase II subunit RPB7 141 226 - -
Cec01g0821 598 CDD RNAP_II_Rpb7_N 62 141 - -
Cec01g0821 598 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 223 597 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(InterPro)
Cec01g0821 598 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 61 138 IPR036898 -
Cec01g0821 598 Pfam V-ATPase subunit C 227 591 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0821 K02148 - csv:101221574 711.449