Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0828 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCGTAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAATGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCTTTAA 795 56.73 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDRKPLLAPAPFILGKRVRTDDDGANNDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9272961 9273755 + CePI673135_01g008280.1 Cec01g0828 194045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0828 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec01g0828 264 MobiDBLite consensus disorder prediction 47 62 - -
Cec01g0828 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cec01g0828 264 MobiDBLite consensus disorder prediction 1 44 - -
Cec01g0828 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cec01g0828 264 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0828 Cec-Chr1:9272961 Cec02g1490 Cec-Chr2:32438782 4.80E-75 dispersed
Cec01g0828 Cec-Chr1:9272961 Cec06g1822 Cec-Chr6:31656827 2.00E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28885 PF03634 TCP 8.80E-32 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0828 K16221 - csv:101214586 380.178