Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0828 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGTGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCCGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCGTAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAATGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCGATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCAACCGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAATTACCTTCCGGGGCATCTGAATTTGCTTGCTTCTTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCTTTAA 795 56.73 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDRKPLLAPAPFILGKRVRTDDDGANNDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9272961 9273755 + CePI673135_01g008280.1 Cec01g0828 194045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0828 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cec01g0828 264 MobiDBLite consensus disorder prediction 47 62 - -
Cec01g0828 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cec01g0828 264 MobiDBLite consensus disorder prediction 1 44 - -
Cec01g0828 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cec01g0828 264 MobiDBLite consensus disorder prediction 1 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0828 K16221 - - csv:101214586 380.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0828 Cec-Chr1:9272961 Cec02g1490 Cec-Chr2:32438782 4.80E-75 dispersed
Cec01g0828 Cec-Chr1:9272961 Cec06g1822 Cec-Chr6:31656827 2.00E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g0828 . 48 262 TCP Transcription Factor Family AT5G23280 63.1 6.0e-67 251.1
Cec02g1490 . 37 257 TCP Transcription Factor Family AT5G23280 59.4 1.2e-59 226.9
Cec06g0019 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 3.8e-67 252.3
Cec05g2670 . 66 160 TCP Transcription Factor Family AT3G47620 89.7 8.4e-41 165.2
Cec01g1783 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cec11g1393 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cec11g1393 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cec05g1534 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.0e-60 229.2
Cec06g0201 . 26 257 TCP Transcription Factor Family AT3G27010 51.0 6.2e-53 204.9
Cec02g1490 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.3e-63 240.0
Cec01g0828 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.5e-63 237.3
Cec11g1393 . 148 389 TCP Transcription Factor Family AT1G35560 50.4 1.6e-43 173.7
Cec07g1766 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28885 PF03634 TCP 8.80E-32 No_clan Cec TF