Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0832 ATGATGCCCATTTTGGACCACCACCATGATCATAATAATCAACCCCTCCTCCTCCCCGCCCATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCCAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTCAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAACTATATTCCGACATAGCAACCAACGTCGTGATCAACGACGACATTGTGTTTCAAGACTATGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAGAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA 846 45.15 MMPILDHHHDHNNQPLLLPAHDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQELYSDIATNVVINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSRMGGLEGFGSVENLSLDDFY 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9339025 9342441 - CePI673135_01g008320.1 Cec01g0832 194049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0832 281 CDD B3_DNA 86 188 IPR003340 GO:0003677(InterPro)
Cec01g0832 281 Gene3D - 84 201 IPR015300 -
Cec01g0832 281 MobiDBLite consensus disorder prediction 44 73 - -
Cec01g0832 281 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 189 IPR044800 GO:0003700(InterPro)
Cec01g0832 281 SUPERFAMILY DNA-binding pseudobarrel domain 86 189 IPR015300 -
Cec01g0832 281 FunFam B3 domain-containing transcription factor FUS3 84 198 - -
Cec01g0832 281 ProSiteProfiles B3 DNA-binding domain profile. 88 190 IPR003340 GO:0003677(InterPro)
Cec01g0832 281 SMART B3_2 88 190 IPR003340 GO:0003677(InterPro)
Cec01g0832 281 Pfam B3 DNA binding domain 88 185 IPR003340 GO:0003677(InterPro)
Cec01g0832 281 MobiDBLite consensus disorder prediction 31 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0832 Cec-Chr1:9339025 Cec09g0909 Cec-Chr9:8603971 2.20E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28887 PF02362 B3 2.10E-17 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0832 K09287 - csv:101222512 409.453