Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec01g0837 | ATGAAAAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTCGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACGGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGTTGGGGGGAAACAATGGGATTTTCTTGGGTAGGGTGA | 423 | 44.44 | MKRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRSWGETMGFSWVG | 140 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9394576 | 9396189 | - | CePI673135_01g008370.1 | Cec01g0837 | 194054 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec01g0837 | 140 | Pfam | Auxin response factor | 71 | 130 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
| Cec01g0837 | 140 | Gene3D | - | 1 | 47 | IPR015300 | - | |
| Cec01g0837 | 140 | Pfam | B3 DNA binding domain | 2 | 46 | IPR003340 | GO:0003677(InterPro) | |
| Cec01g0837 | 140 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 3 | 131 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
| Cec01g0837 | 140 | SUPERFAMILY | DNA-binding pseudobarrel domain | 4 | 74 | IPR015300 | - | |
| Cec01g0837 | 140 | ProSiteProfiles | B3 DNA-binding domain profile. | 1 | 47 | IPR003340 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec01g0837 | Cec-Chr1:9394576 | Cec03g0767 | Cec-Chr3:8512698 | 2.70E-61 | dispersed | |
| Cec01g0837 | Cec-Chr1:9394576 | Cec04g2197 | Cec-Chr4:39695644 | 1.90E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28889 | PF06507 | Auxin_resp | 1.30E-21 | No_clan | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec01g0837 | K14486 | - | csv:101208098 | 240.736 |