Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0837 ATGAAAAGACAGCCAAAACGACACCTTCTTACAACTGGTTGGAGTGTGTTCGTTAGTGCCAAAAGATTGGTTGCTGGGGATTCTGTACTTTTTATATGGAATGAAAAAAATCAGCTTCTTTTGGGTATACGCCGTGCCACAAGACCACAAACTGTGATGCCCTCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGACTCCTTGCTGCTGCAGCTCATGCTGCTGCAACGAATAGCTGTTTCACGGTGTTCTACAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAGTCAAGCGTTCGAAGTTGGGGGGAAACAATGGGATTTTCTTGGGTAGGGTGA 423 44.44 MKRQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRSWGETMGFSWVG 140
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9394576 9396189 - CePI673135_01g008370.1 Cec01g0837 194054
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0837 140 Pfam Auxin response factor 71 130 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec01g0837 140 Gene3D - 1 47 IPR015300 -
Cec01g0837 140 Pfam B3 DNA binding domain 2 46 IPR003340 GO:0003677(InterPro)
Cec01g0837 140 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 131 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec01g0837 140 SUPERFAMILY DNA-binding pseudobarrel domain 4 74 IPR015300 -
Cec01g0837 140 ProSiteProfiles B3 DNA-binding domain profile. 1 47 IPR003340 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0837 Cec-Chr1:9394576 Cec03g0767 Cec-Chr3:8512698 2.70E-61 dispersed
Cec01g0837 Cec-Chr1:9394576 Cec04g2197 Cec-Chr4:39695644 1.90E-62 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28889 PF06507 Auxin_resp 1.30E-21 No_clan Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0837 K14486 - csv:101208098 240.736