Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0839 | ATGGTGGCACATGCCTGCTGTCAAATCAAAAGGGGAATGGAGGGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGTAAGTCCCTTGATGTTCTGTCCATTTGTGGAAATAAGTGTGATGGTTTTCTTTGTTAA | 747 | 46.99 | MVAHACCQIKRGMEGEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKSLDVLSICGNKCDGFLC | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 9405712 | 9408023 | - | CePI673135_01g008390.1 | Cec01g0839 | 194056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0839 | 248 | CDD | B3_DNA | 171 | 232 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0839 | 248 | Pfam | B3 DNA binding domain | 172 | 234 | IPR003340 | GO:0003677(InterPro) | |
Cec01g0839 | 248 | SUPERFAMILY | DNA-binding pseudobarrel domain | 156 | 231 | IPR015300 | - | |
Cec01g0839 | 248 | Gene3D | - | 170 | 242 | IPR015300 | - | |
Cec01g0839 | 248 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 64 | 231 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0839 | Cec-Chr1:9405712 | Cec03g0767 | Cec-Chr3:8512698 | 1.30E-90 | dispersed | |
Cec01g0839 | Cec-Chr1:9405712 | Cec04g2197 | Cec-Chr4:39695644 | 1.80E-92 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28890 | PF02362 | B3 | 3.30E-07 | CL0405 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0839 | K14486 | - | csv:101208098 | 390.963 |