Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0839 ATGGTGGCACATGCCTGCTGTCAAATCAAAAGGGGAATGGAGGGGGAGATGGGAGAGCGCGGTGGGGTTGTGAGTGATTGCGTTGGGTTTAGGCAGCGGAGGAATCTTCTTAATTATTGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTTGGTCAGCAGGATCACGAAGGAGGGGAAAAGAAATGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCCCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCACAGCGAACAGGTTGCTGCCACGACCAATAAAGAAGTTGATGGGCACATACCCAATTACCCGAACCTACCTCCCCAGTTGATATGTCAACTTCACAACGTTACAATGCATGCAGATGTGGAAACGGATGAAGTATATGCCCAGATGACATTACAGCCTCTGACTGCACAAGAGCAAAAGGATACATTTCTACCCATGGAATTGGGGATTCCTAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGCACCCATGGAGGATTTTCTGTACCTCGTCGTGCTGCTGAGAAAGTTTTTCCTCCACTGGATTTTTCACAACAGCCACCAGCACAAGAGCTGATTGCAAGGGACCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGTAAGTCCCTTGATGTTCTGTCCATTTGTGGAAATAAGTGTGATGGTTTTCTTTGTTAA 747 46.99 MVAHACCQIKRGMEGEMGERGGVVSDCVGFRQRRNLLNYWGKLDMKLSTSGFGQQDHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGKSLDVLSICGNKCDGFLC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9405712 9408023 - CePI673135_01g008390.1 Cec01g0839 194056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0839 248 CDD B3_DNA 171 232 IPR003340 GO:0003677(InterPro)
Cec01g0839 248 Pfam B3 DNA binding domain 172 234 IPR003340 GO:0003677(InterPro)
Cec01g0839 248 SUPERFAMILY DNA-binding pseudobarrel domain 156 231 IPR015300 -
Cec01g0839 248 Gene3D - 170 242 IPR015300 -
Cec01g0839 248 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 64 231 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0839 Cec-Chr1:9405712 Cec03g0767 Cec-Chr3:8512698 1.30E-90 dispersed
Cec01g0839 Cec-Chr1:9405712 Cec04g2197 Cec-Chr4:39695644 1.80E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28890 PF02362 B3 3.30E-07 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0839 K14486 - csv:101208098 390.963