Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0872 ATGGTTCTCTCCAAGACTGCTTCTCAGACCGATGTCTCCGTCCACTCCACCTTCGCTTCTCGATATGTACGAACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCCAAGGAGGCTGCGTTTCAGATCATTAATGATGAACTCATGCTCGATGGAAACCCTAGGTTGAATTTGGCCTCCTTCGTCACTACTTGGATGGAGCCTGAGTGTGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAATATCCTGTCACTACAGAGCTTCAGAACCGATGTGTGAACATGATAGCTCATTTGTTCAATGCCCCATTGGGTGATTCTGAGACGGCAGTGGGAGTGGGAACAGTGGGATCGTCAGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAAGGAAGGCTGAAGGAAAGCCCTATGACAAGCCCAACATTGTCACTGGAGCTAACGTCCAGGTATGCTGGGAGAAATTTGCAAGGTACTTTGAGGTAGAACTAAAGGAGGTGAAATTAAGGGAAGGTTATTATGTGATGGATCCAGAGAAAGCTGTGGAGTTGGTTGATGAAAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACTCTCAATGGAGAATTCGAAGATGTAAAGCTCTTGAATGATCTCTTGATCGAGAAGAACAAAGAAACTGGATGGGATACTCCTATTCATGTTGATGCTGCTAGTGGAGGGTTTATTGCCCCATTCATTTACCCTGAGCTAGAATGGGACTTTAGGCTGCCCCTTGTAAAGAGTATTAATGTAAGTGGCCACAAGTATGGGCTTGTTTATGCTGGAATTGGTTGGGTTATCTGGAGGAACAAAGAAGATTTGCCTGAAGAACTCATCTTCCATATCAACTATCTTGGAGCGGACCAACCCACTTTCACCCTCAATTTCTCCAAAGGATCTAGCCAAGTCATTGCTCAGTATTACCAATTGATCCGCTTGGGTTATGAGGGATACCAAAACGTGATGGAAAACTGCAAAGAAAACATGATCGTTCTAAAGGAAGGACTCGAAAGAACAGGGCGATTCAACATCGTGTCGAAGGACAATGGAGTTCCACTTGTGGCCTTCTCCTTGAAAGACAACACACGCCATACAGAGTTTGAGGTCTCAGAAATGCTGAGGAGATTCGGGTGGATTGTACCAGCTTACACCATGCCTCCTGATGCACAACACATAACAGTCCTTAGAGTAGTGATCCGAGAAGACTTCTCTCGCACACTTGCTGAGCGTCTTGTGACGGATATTGAGAAAACGCTGCACGAGCTCGATAGCCTCCCGTCGAGGGCTGATATCAAGACGACGGTGGCCGGAGAAGAGACACAGAAGAATGATGTGGTGGTGGCAAAGAAGAGCGCGCTGGAGACACAGAGGGAGATCACAACTGTGTGGAGGAAGTTTGTGATGGAAAAGAAGAAGACTAATGGAGTTTGTTAG 1500 46.27 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSETAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCKENMIVLKEGLERTGRFNIVSKDNGVPLVAFSLKDNTRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVTDIEKTLHELDSLPSRADIKTTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10033264 10042600 + CePI673135_01g008720.1 Cec01g0872 194089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0872 499 Gene3D - 66 360 IPR015421 -
Cec01g0872 499 Gene3D - 361 448 - -
Cec01g0872 499 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Cec01g0872 499 CDD DOPA_deC_like 59 439 - -
Cec01g0872 499 FunFam Glutamate decarboxylase 66 360 - -
Cec01g0872 499 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cec01g0872 499 FunFam Glutamate decarboxylase 1 65 - -
Cec01g0872 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cec01g0872 499 Gene3D - 1 65 - -
Cec01g0872 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cec01g0872 499 FunFam Glutamate decarboxylase 361 448 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0699 Cec-Chr1:7804997 Cec01g0872 Cec-Chr1:10033264 6.70E-243 dispersed
Cec01g0701 Cec-Chr1:7823502 Cec01g0872 Cec-Chr1:10033264 2.10E-242 dispersed
Cec01g0872 Cec-Chr1:10033264 Cec01g1812 Cec-Chr1:32552906 2.40E-229 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0872 K01580 - csv:101216119 994.571