Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0878 ATGGAGAACAACCAACCTGAGAATCAACATCCTCTTCACAAAACCACTAGCTTCAACGATGCCCCCAAATTGGATGCTGTTGCTGATGATGCCAATCTCACCCCTCCTCTCCCTCCTCTTCTACAAACTGATGCTGCTCTAAAATCTTTGGAGGATCAGGATCAGAATAATCAGAATCAGCATCAGGATCAACCTCAGGATCAACCTCAGGATCAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGAGGAGGAGAAGAAGGAAGTGGAGGAGGAAGAGAACAGCAAGGAAGGGGAGGAAAATACTGAGGTTGAACAATCCAACAACGAACCGGATCTTCATTACAATCTCCATACCATTCTCGAAGATGTCGATCAATTTCTCTCAACTCCTCACAGTTCTCGTGATCAAGAGGAAGATTCTGTTGTTCAAATTCCTCAGTTCATCGACAAATTCTTGGATCTTGTCGATGTGAAGATTGACCAATACAATAACGACGAATCGAATGCGAAGGAGAAAGAGTGTAGAGTACCGGAGGATGAGTCCACTTTTCTCGAAGCCGTCGATCGGATATGCAAGCTGAAAACTGCAATTCACGAAATGAAATTGGAAGAGGATAAGAATTCGTTGATCAATCGCATCGGGAGCACTCAACAGCGAGCGATTTCTTATTTGGAAGAAGAGTTCAGATTCTTTCTCGAGGAATCTAGAAACAGCGATTCCGATCCTGCTGCCGATACGAAAGGGAAACAAGAACAGGATCGTTCTGCATTACCGGACAATGAATCCGATCAGTTCCAGTTTCCAGGTTACTCCGACGAGATCGTGAACTATTTGAACAAAATCGCTAAGCAAATGATTTCCGGTGGATACGAATCGGAATGCTGCCAAGCCTACATGGTTGCGAGAAGAAACATATTCGAAGACGCCTTGCTGAAGCTCGGTTTCGAGAAACACAGCATCGATGATATCCAGAAGATGAGTTGGGAATCAATGGAGAGGGAGATCGCGACATGGATCAGAACCATCAAGCAATGCGCCACCATTTTATTCTCCGGCGAACGGAATCTCGTCGAATCTGTATTTTCATCGTATCCTCCAATGTCCGCCAGTCTGTTTAGCAATCTAACTCGCGGCATTATGATTCAACTCCTAAATTTCTCAGAAGGTGTAGCAATGACGAAACGCTCCGCCGAGAAATTGTTCAAGCTTCTTGATATGTACGAAGCTCTTCGTGACATGGTCCCAAAAATGGAAGTATTATTTCCAGAAGAATCCGCTAACGAGCTCAAAACAGAAACCACAACCGCTCGAACTCGTCTAGGCGAAGCGGCGATTTGCATATTTTGCGATCTCGAGAACTCAATCAAAGCAGACACCGGAAAAACTCCGGTACCAGGCGGCGCCGTTCATCCATTAACTCGATACACCATAAACTACTTGAAATACGCTTGCGAGTACAGAAACACACTGGAACAGATTTTCAAAGAGCATTCAAAGATCGAACGAGCCGATTCAACAAGTCGACCACATTTCGAAGGCGAACAAGCACCACAATACAACTCTAGCATTGACAATCAATCCCCATTCGCGGTTGAACTGACGCGAGTAATGGAGCTCCTGGACTCAAATCTGGAAGCAAAATCAAAGCTATACAGAGATATAGCACTGAGTTCGATTTTCATGATGAACAACGGACGATACATCTTGCAGAAGATCAAAGGATCTGCAGATATCCATGAACTACTAGGCGATACGTGGTACAGGAAGAGATCTTCGGATTTGCGTCAGTATCACAAGAATTACCAGAGAGAAACGTGGGGGAAGTTGTTAGGTTGTTTGAACCACGAAGGATTAACAGTGCACGGGAAAGTGGTAAAGCCAGTGCTGAAGGAGAGGTTTAAAGGATTCAACGCGCTGTTCGAAGAGATTCATAAAACACAGAGCTCGTGGATCATAAGCGACGAGCAACTTCAATCGGAGCTGCGAGTATCGATATCGGCGGTGATGATTCCGGCGTACAGATCATTCTTAGGGAGGTTTTCGCAGGTTTTGGATCCGGGGAGACAAACAGAGAAATATATAAAGTTTCAGCCTGAAGATATAGAGACATACATAGATGATCTATTTGATGGAAATCCAAGCTCCATGGCAAGAAGGAGAACATAA 2169 44.72 MENNQPENQHPLHKTTSFNDAPKLDAVADDANLTPPLPPLLQTDAALKSLEDQDQNNQNQHQDQPQDQPQDQKEKEKEKEKEEEEKKEVEEEENSKEGEENTEVEQSNNEPDLHYNLHTILEDVDQFLSTPHSSRDQEEDSVVQIPQFIDKFLDLVDVKIDQYNNDESNAKEKECRVPEDESTFLEAVDRICKLKTAIHEMKLEEDKNSLINRIGSTQQRAISYLEEEFRFFLEESRNSDSDPAADTKGKQEQDRSALPDNESDQFQFPGYSDEIVNYLNKIAKQMISGGYESECCQAYMVARRNIFEDALLKLGFEKHSIDDIQKMSWESMEREIATWIRTIKQCATILFSGERNLVESVFSSYPPMSASLFSNLTRGIMIQLLNFSEGVAMTKRSAEKLFKLLDMYEALRDMVPKMEVLFPEESANELKTETTTARTRLGEAAICIFCDLENSIKADTGKTPVPGGAVHPLTRYTINYLKYACEYRNTLEQIFKEHSKIERADSTSRPHFEGEQAPQYNSSIDNQSPFAVELTRVMELLDSNLEAKSKLYRDIALSSIFMMNNGRYILQKIKGSADIHELLGDTWYRKRSSDLRQYHKNYQRETWGKLLGCLNHEGLTVHGKVVKPVLKERFKGFNALFEEIHKTQSSWIISDEQLQSELRVSISAVMIPAYRSFLGRFSQVLDPGRQTEKYIKFQPEDIETYIDDLFDGNPSSMARRRT 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10145292 10147460 - CePI673135_01g008780.1 Cec01g0878 194095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0878 722 PANTHER EXOCYST COMPLEX PROTEIN EXO70 91 713 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cec01g0878 722 Pfam Exocyst complex component Exo70 N-terminal 153 234 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 1 16 - -
Cec01g0878 722 SUPERFAMILY Cullin repeat-like 179 711 IPR016159 -
Cec01g0878 722 Gene3D Exocyst complex component Exo70 159 720 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 236 259 - -
Cec01g0878 722 Pfam Exo70 exocyst complex subunit C-terminal 338 708 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cec01g0878 722 Coils Coil 70 102 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 67 84 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 1 110 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 48 66 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 236 268 - -
Cec01g0878 722 MobiDBLite consensus disorder prediction 85 99 - -
Cec01g0878 722 FunFam Exocyst subunit Exo70 family protein 167 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0878 K07195 - - csv:101206040 1151.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0878 Cec-Chr1:10145292 Cec07g1652 Cec-Chr7:32109478 4.70E-173 dispersed
Cec01g0878 Cec-Chr1:10145292 Cec10g2088 Cec-Chr10:35559846 6.70E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2404 . 12 653 EXO70 exocyst subunit family AT5G03540 76.6 9.9e-287 982.6
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 2.5e-266 914.8
Cec04g1189 . 1 638 EXO70 exocyst subunit family AT5G52340 80.3 1.1e-298 1022.3
Cec05g2404 . 14 653 EXO70 exocyst subunit family AT5G52340 75.2 4.1e-274 940.6
Cec04g1189 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 2.2e-176 615.9
Cec05g2404 . 149 653 EXO70 exocyst subunit family AT5G52350 60.3 2.8e-168 589.0
Cec03g0044 . 1 623 EXO70 exocyst subunit family AT5G58430 66.7 1.0e-245 846.3
Cec03g0044 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 7.8e-174 607.4
Cec07g1652 . 60 673 EXO70 exocyst subunit family AT5G13150 53.3 2.9e-174 609.0
Cec01g0878 . 111 722 EXO70 exocyst subunit family AT5G13990 54.5 1.0e-188 657.1
Cec07g1568 . 9 609 EXO70 exocyst subunit family AT1G72470 65.0 1.3e-216 749.6
Cec07g1568 . 9 607 EXO70 exocyst subunit family AT1G54090 61.8 3.9e-208 721.5
Cec07g1568 . 9 608 EXO70 exocyst subunit family AT3G14090 64.2 2.4e-218 755.4
Cec03g1406 . 27 664 EXO70 exocyst subunit family AT5G50380 61.7 1.1e-224 776.5
Cec03g0358 . 15 627 EXO70 exocyst subunit family AT5G50380 61.1 4.8e-212 734.6
Cec08g1297 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Cec10g2088 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.5e-178 622.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011360 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 0 31