Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0916 ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCGTCTCTGCAGCAGCAGATAGACACCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA 519 51.06 MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10961322 10964908 + CePI673135_01g009160.1 Cec01g0916 194133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0916 172 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cec01g0916 172 MobiDBLite consensus disorder prediction 129 154 - -
Cec01g0916 172 Coils Coil 96 123 - -
Cec01g0916 172 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Cec01g0916 172 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 16 137 - -
Cec01g0916 172 MobiDBLite consensus disorder prediction 129 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0916 Cec-Chr1:10961322 Cec07g0514 Cec-Chr7:5931469 4.40E-45 dispersed
Cec01g0916 Cec-Chr1:10961322 Cec02g1940 Cec-Chr2:37289655 2.70E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28896 PF03195 LOB 2.00E-43 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0916 - - - 0.0