Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g0916 | ATGAAGACGGAGAATGGAAGGAAACAAGGGGGAGGAACAGGAGCAGCGCCATGTGCAGCATGCAAGCTGCTGAGAAGAAGGTGTGGAGAGGAATGTGTATTTGCTCCATACTTTCCAGCAGACCAACCTCATAAGTTTGCCAATGTTCATAAGGTTTTTGGTGCTAGCAATGTCAACAAAATGCTCCAGGAGTTGCCAATTCACCAACGTGGAGATGCAGTGAGCAGTTTGGTGTATGAAGCAAATGCTCGAGTGCGCGACCCGGTGTACGGGTGCGTCGGAGCAATATCGTCTCTGCAGCAGCAGATAGACACCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTAAGGGTGCGTCAGACAGCACCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAATCCAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATGGGAGACTCAATGTGGTGA | 519 | 51.06 | MKTENGRKQGGGTGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRVRQTAPFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMVVDQAMGDSMW | 172 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10961322 | 10964908 | + | CePI673135_01g009160.1 | Cec01g0916 | 194133 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g0916 | 172 | Pfam | Lateral organ boundaries (LOB) domain | 17 | 114 | IPR004883 | - | |
Cec01g0916 | 172 | MobiDBLite | consensus disorder prediction | 129 | 154 | - | - | |
Cec01g0916 | 172 | Coils | Coil | 96 | 123 | - | - | |
Cec01g0916 | 172 | ProSiteProfiles | LOB domain profile. | 16 | 117 | IPR004883 | - | |
Cec01g0916 | 172 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 16 | 137 | - | - | |
Cec01g0916 | 172 | MobiDBLite | consensus disorder prediction | 129 | 152 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g0916 | Cec-Chr1:10961322 | Cec07g0514 | Cec-Chr7:5931469 | 4.40E-45 | dispersed | |
Cec01g0916 | Cec-Chr1:10961322 | Cec02g1940 | Cec-Chr2:37289655 | 2.70E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28896 | PF03195 | LOB | 2.00E-43 | No_clan | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g0916 | - | - | - | 0.0 |