Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0975 ATGATGGCTAATCTTTTCATTCTCAAGTTCCCAAGTTTCAGTTCCAGTTTAAGGACTGTCTCTGCTTCAGCTTCATCAAATGGTGCTCATCCATTATCAGCAGGGAGTGGCAGCGGCAGTGGGCCAATGATCCTGGAGCTTCCTCTGGAGAAGATAAGGAGACCTCTAATGAGGACCAGAGCTAACGACCCCACTAAAGTCAAAGAACTAATGGACAGTATACAAGAAATTGGGCTTCAAGTACCCATTGATGTACTTGAAGTTGATGGAGTTTATTATGGTTTCTCTGGTTGTCATCGCTACGAAGCTCATCAACGCCTCGGGCTTCCTACAATCCGTTGCAAAATTCGTCGTGGAACCAAAGAAACCTTGAGATCCATTTCAATTTCTGAAACTCTTGCTAACTTGAACATAATGCAACTCTGCTGTCTTGAATCCAAAGATGATATGGAAGAGAAAGATGGGCTTAGGTGCAGTCTGAAGTAG 486 43.62 MMANLFILKFPSFSSSLRTVSASASSNGAHPLSAGSGSGSGPMILELPLEKIRRPLMRTRANDPTKVKELMDSIQEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGTKETLRSISISETLANLNIMQLCCLESKDDMEEKDGLRCSLK 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13149686 13153762 - CePI673135_01g009750.1 Cec01g0975 194192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0975 161 PANTHER UNCHARACTERIZED 21 127 IPR016692 GO:0005737(PANTHER)|GO:0032542(InterPro)|GO:0032542(PANTHER)|GO:0034599(PANTHER)
Cec01g0975 161 FunFam Sulfiredoxin chloroplastic/mitochondrial 42 129 - -
Cec01g0975 161 Pfam ParB/Sulfiredoxin domain 46 132 IPR003115 -
Cec01g0975 161 CDD Srx 44 125 - -
Cec01g0975 161 Gene3D - 42 129 - -
Cec01g0975 161 SMART ParB_7 45 133 IPR003115 -
Cec01g0975 161 SUPERFAMILY ParB/Sulfiredoxin 37 132 IPR036086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0975 K12260 - - csv:101217757 221.09
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g143 . . . . . . . . . Cmo18g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00950 . Cec01g0975 Cco01g1022 Clacu01g0981 Cmu01g0934 Cre01g0863 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007624 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 36