Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g0983 ATGGCTCTGCGGGACTTCCTCTTCCTGTTTTTCTTCTTGATCTTTGGTTGTATTCCATTTACTCGTGCTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCTCAGCTGACTGGTTGGATTGGTAATGGAGGCGATCCATGTGTAGAGTCATGGAAAGGGGTGACTTGTGAAGGATCTGCTGTTGTTTCCATTGAGATTTCTGGGTTAGGGCTGAATGGAACGATGGGTTATGCGCTCTCAAGTTTTTTGTCATTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACACGATTCCTTACCAATTGCCACCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAAGTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGCGATAGGAGATGTTTTCACCAATCTTACTACCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTATCCAATGTTTCTTCCTTGTTTTTGCAGAACAACCAATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGGTTGAAAATTTCATGTATGATGGAAATTCATTTGACCATAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCTGGTAGATCTCGTAGTAGCCCCAGACATCCTGGGTCTAGCGGTGGCACCCATACTGCCCCAAGTTCTGATGGGAGCTCATCCCACTCAAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCATCCAGAAGAGAAAACGAAAGAACATTGGTCTTCGAGCTTCCAGTGGAAGGCTGTCTGTTGGCACCAGTGTGAATGCTGAGGTGCAAGAGCATCGGGTGAAAAGTGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGGTTGCCGGCGAAAAATGGATCGGTGAAAAGAATAAAGTCCCCTATCACTGCTACTTCGTACACCGTTGCATCCCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGCATAGTTGGTGAAGGTTCTCTTGGTCGGGTTTACAAAGCTGACTTTCCTAACGGGAAGATAATGGCGATTAAGAAAATCGATAATGCAGCGCTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCAGTTTCAAACATGTCAAGGTTGAGGCATACAAACATTGTTACACTAAATGGTTATTGTGCAGAGCACGGCCAGCGTCTTCTAGTTTATGAGTTCATTGGAAATGGAAGTTTACATGACATGCTGCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAACGCACGTGTCCGGGTAGCACTTGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAACATATTACTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACAGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGCTATAGTGCTCCGGAATTTGCCTTGTCAGGAATATACACTGTCAAAAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCGCTTGACAGTTCTAGGGTGAGATCAGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTACATGATATCGATGCCTTAGCAAAAATGGTAGATCCTACTTTGAACGGAATGTACCCTGCGAAATCTCTGTCCCGCTTTGCTGACATCATTGCTCTCTGTGTTCAGCCTGAGCCTGAATTTCGACCTCCCATGTCCGAAGTAGTACAAGCACTGGTGCGTTTAGTGCAAAGAGCGAGTGTGGTAAAAAGGCATTCGAGCGACGAGACAGGTTTCAGTTACAGAACGCCTGAGCACGATGCAGTTGAGTTGCCATTTTGA 2136 44.29 MALRDFLFLFFFLIFGCIPFTRALTDASDVQALQVIYTSLNSPPQLTGWIGNGGDPCVESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDTIPYQLPPNLTSLNMAKNSLSGNLPYSFSTMASLNYLNMSHNLLSQAIGDVFTNLTTLGTLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNQLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFMYDGNSFDHSPAPPPPPFTPPPPGRSRSSPRHPGSSGGTHTAPSSDGSSSHSNKGLPVLAIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSVGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLPAKNGSVKRIKSPITATSYTVASLQTATNSFSQECIVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDETGFSYRTPEHDAVELPF 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13367733 13372940 + CePI673135_01g009830.1 Cec01g0983 194200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g0983 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 481 691 - -
Cec01g0983 711 CDD STKc_IRAK 409 680 - -
Cec01g0983 711 Gene3D Transferase(Phosphotransferase) domain 1 481 704 - -
Cec01g0983 711 Gene3D Ribonuclease Inhibitor 25 252 IPR032675 -
Cec01g0983 711 MobiDBLite consensus disorder prediction 244 263 - -
Cec01g0983 711 SUPERFAMILY Protein kinase-like (PK-like) 383 677 IPR011009 -
Cec01g0983 711 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cec01g0983 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 253 - -
Cec01g0983 711 Gene3D Phosphorylase Kinase; domain 1 366 480 - -
Cec01g0983 711 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cec01g0983 711 MobiDBLite consensus disorder prediction 264 286 - -
Cec01g0983 711 ProSiteProfiles Protein kinase domain profile. 403 680 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g0983 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 211 682 IPR046959 -
Cec01g0983 711 SUPERFAMILY L domain-like 25 232 - -
Cec01g0983 711 MobiDBLite consensus disorder prediction 240 286 - -
Cec01g0983 711 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Cec01g0983 711 Pfam Leucine Rich Repeat 211 230 IPR001611 GO:0005515(InterPro)
Cec01g0983 711 Pfam Leucine Rich Repeat 94 113 IPR001611 GO:0005515(InterPro)
Cec01g0983 711 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Cec01g0983 711 Pfam Protein kinase domain 406 675 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g0983 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 368 480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g0983 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0983 Cec-Chr1:13367733 Cec08g0512 Cec-Chr8:15060697 8.00E-133 dispersed
Cec01g0983 Cec-Chr1:13367733 Cec07g1541 Cec-Chr7:30982735 2.90E-143 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec01g0983 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cec10g1755 . 73 798 Strubbelig Receptor Gene Family AT5G06820 53.8 6.4e-186 647.9
Cec02g0135 . 65 817 Strubbelig Receptor Gene Family AT4G03390 62.2 5.5e-204 708.0
Cec04g1985 . 17 752 Strubbelig Receptor Gene Family AT4G03390 52.1 8.6e-165 577.8
Cec09g0147 . 470 764 Strubbelig Receptor Gene Family AT4G03390 58.7 5.7e-92 335.9
Cec08g0512 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 3.2e-147 519.2
Cec09g0147 . 99 762 Strubbelig Receptor Gene Family AT3G13065 50.6 3.5e-101 366.3
Cec08g0512 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 1.4e-193 673.3
Cec09g0147 . 101 767 Strubbelig Receptor Gene Family AT1G78980 50.1 1.5e-120 430.6
Cec07g1541 . 1 813 Strubbelig Receptor Gene Family AT1G53730 52.1 3.8e-199 691.8
Cec09g0147 . 95 789 Strubbelig Receptor Gene Family AT1G53730 60.7 8.0e-181 630.9
Cec08g0512 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.5 7.5e-155 544.7
Cec01g0983 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 3.4e-147 519.2
Cec09g0147 . 95 779 Strubbelig Receptor Gene Family AT3G14350 54.7 2.5e-160 562.8
Cec01g0983 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 1.4e-177 619.8
Cec07g1541 . 492 820 Strubbelig Receptor Gene Family AT4G22130 63.4 8.0e-120 427.9
Cec09g0147 . 465 781 Strubbelig Receptor Gene Family AT4G22130 63.6 6.3e-117 418.3
Cec02g0135 . 516 827 Strubbelig Receptor Gene Family AT4G22130 58.8 7.8e-107 384.8
Cec08g0512 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.1 7.8e-99 358.2
Cec04g1985 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 3.9e-98 355.9
Cec10g1755 . 459 781 Strubbelig Receptor Gene Family AT4G22130 52.3 1.4e-92 337.4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71688 PF00069 Pkinase 3.50E-44 CL0016 Cec PK