Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1046 ATGACGAGAAAGAAGGTGAAACTTGCATACATCACAAATGACGCAGCAAGGAAAGCTACATTCAAGAAAAGGAAGAAAGGATTACTCAAGAAGCTCACCGAGCTCACCACTCTGTGCGGGATTGAGGCATGTGCCATAATCTTTAGCCCCTTTGATTCCCAACTTGACCTCTGGCCTTCTACCTTGGGGTTCCAGAGGGTTCTCTCTAAGTTCAAAAGCCTACCAGAGATGGAGCAATGTAAGAAGATGGTCAACCAAGAGACGTTCCTCCGTGACCGGATCGCCAAGGCTGCCGACCAACTCAAGAAGTTGCAGAGGGAGAATCGCGAGAAGGAGATTGCTCGACTCATGTTTCAGAGCCTCGTAGTAGGAGCTGCGCCACCGCCCGATCTCAATGTCATTGATTTGAACGATCTTGGGTGGCTTGTTGATCAAACAATGGTTGTTATTAATAAAAGGATGGGGTTGCTTATGGCGAAGCAGCCACTGCGTGTAGAGGCGGTGGAGCCGTCGTGGTTCATGGAGATGGTGAGTCAAGAAGTTGATGATGATGATCAAATGAGATTCAACATTGGGGATGACGTGATTCAACTTCCAAGTTTTGGGGAGAATGATAACCGTGGTGCTTTTTGGTCAAATGATGCCTTTTTCCCTTGA 657 47.49 MTRKKVKLAYITNDAARKATFKKRKKGLLKKLTELTTLCGIEACAIIFSPFDSQLDLWPSTLGFQRVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEIARLMFQSLVVGAAPPPDLNVIDLNDLGWLVDQTMVVINKRMGLLMAKQPLRVEAVEPSWFMEMVSQEVDDDDQMRFNIGDDVIQLPSFGENDNRGAFWSNDAFFP 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15625204 15625860 - CePI673135_01g010460.1 Cec01g1046 194263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1046 218 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Cec01g1046 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 Coils Coil 87 114 - -
Cec01g1046 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Cec01g1046 218 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1046 218 PANTHER MADS BOX PROTEIN 1 114 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec01g1046 218 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1046 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1046 Cec-Chr1:15625204 Cec03g1848 Cec-Chr3:36808135 7.20E-61 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
Cec05g2649 . 1 290 Type I MADS-box Gene Family AT2G03060 55.8 9.3e-88 320.9
Cec10g1010 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.6e-50 196.8
Cec03g1848 . 1 163 Type I MADS-box Gene Family AT5G48670 63.8 3.3e-54 209.1
Cec01g1046 . 1 157 Type I MADS-box Gene Family AT5G48670 57.3 1.7e-45 180.3
Cec07g1034 . 44 195 Type I MADS-box Gene Family AT1G77950 55.8 2.8e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28900 PF00319 SRF-TF 4.50E-17 No_clan Cec TF