Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1112 ATGATGAAGCAAGGAGCAGAAAATGTTCCAGGTTACATGGGGGGATGGTGGGAGGGGAAAGAAATCAGTTGCTTGAAGTTACAAAATCTGGTGAGGCCTAAGAGGACAAAAACAAATTTAAGGCTGTTTTTATGGTGTTTGAATATTACATCAAAGTTAGCCATGGAGTTTGGGATGAATCCACTGGTTCTAGTTGCTTACAGGCAGATGTTTGCTACCATAGCCATAGCTCCTTGTGCTTACTGGTTTGAGAGAAAAGGGAGACCCAAGATTACAAAGCCTATCCTGTTTCAGATTCTACTTTGTTCCTTAACTGGGGCAACAGCAAACCAAGTCTTTTACTACGTTGGGTTGAAATATTCAACCCCCACCATCGCATGCGCATTGACCAATGTTCTGCCTGCTGCAACTTTTGTCCTCGCTGTTCTTTTCAGACAAGAATCTGTGGGGATCAAAACAAGCCCAGGTGCAGCTAAGGTGATGGGGACTGTTGTATGTGTCGGAGGGGCAATGTTGCTGTCGTTCTACCGTGGACAAACAATCCAGCTTGGTGAATCTGGTATTCATTGGAAGTATGCCGAGTTAATGAGGGGGGGAAGTTCAACCAACCAAGGCAGCAGCATCTGGGGCTCCCTCTGCTTGATCATAAGCTCTGTCGCTTGGGCGGCTTGGTTTGTCATCCAAGCGAGAGTGAATGAGAAGTTTCCAGCACCCTACACGAGCACAGCTCTCATGACTTTCATGGCAACCATTCAATGTGGAGCAATTGCAGTTGGCGTTGAGCACAAGACGGCTGCAGCTTGGTCATTGAAAAGTTCAATCAGGCTTGTTGGCGCTCTCTATGCGGGAGTGGCGTGCTCTGGGGTGGCATTTTGCCTAACCTCCTGGAGTATCCAAAAGAAAGGTCCTCTCTACGCCTCAGTTTTCAGCCCCTTCTTGCTCGTTATCGTGGCTATTTTCAGCTGGGCCTTTTTTCAAGAAAAATTATACGTTGGAACTGTTGTAGGGTCATTGTTGATTGTTGTTGGGCTATACGCTGTCCTATGGGGAAAGACCAAGGAGGTGAAACTACAACAACATATCGAAATGGCGGCGGCAGCAGAGGCAAAGCTAGATGACTGTAATAACAAAGACTTAGAAGAACAGTCCTATGTGGTTTCAAATGCCACTATTCTCCATAAGTAA 1185 46.33 MMKQGAENVPGYMGGWWEGKEISCLKLQNLVRPKRTKTNLRLFLWCLNITSKLAMEFGMNPLVLVAYRQMFATIAIAPCAYWFERKGRPKITKPILFQILLCSLTGATANQVFYYVGLKYSTPTIACALTNVLPAATFVLAVLFRQESVGIKTSPGAAKVMGTVVCVGGAMLLSFYRGQTIQLGESGIHWKYAELMRGGSSTNQGSSIWGSLCLIISSVAWAAWFVIQARVNEKFPAPYTSTALMTFMATIQCGAIAVGVEHKTAAAWSLKSSIRLVGALYAGVACSGVAFCLTSWSIQKKGPLYASVFSPFLLVIVAIFSWAFFQEKLYVGTVVGSLLIVVGLYAVLWGKTKEVKLQQHIEMAAAAEAKLDDCNNKDLEEQSYVVSNATILHK 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17228052 17231124 + CePI673135_01g011120.1 Cec01g1112 194329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1112 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 266 352 - -
Cec01g1112 394 PANTHER WAT1-RELATED PROTEIN 42 365 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cec01g1112 394 Pfam EamA-like transporter family 209 348 IPR000620 GO:0016020(InterPro)
Cec01g1112 394 Pfam EamA-like transporter family 58 174 IPR000620 GO:0016020(InterPro)
Cec01g1112 394 SUPERFAMILY Multidrug resistance efflux transporter EmrE 67 176 - -
Cec01g1112 394 Coils Coil 357 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1112 Cec-Chr1:17228052 Cec02g1558 Cec-Chr2:33181021 1.00E-113 dispersed
Cec01g1112 Cec-Chr1:17228052 Cec11g1619 Cec-Chr11:30471817 1.60E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1112 - - - 0.0