Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1130 ATGGACTCTGGTGATGTTGAGCGATCCTTGCTTCCTAAGCTCTCCGATTCTGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCATGGTAGCTTTTCACATTCAGTAGAAAATAATAATCAACCACAAAATTATGATGTAATATCTCATCAACGTATTGCTGTTTCACAAGTTAGTTTTAGGAAAGTATTTGTTCTTCTCGCGACTTATTTGGGAGGGGGCACGTTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGCAAGAAAACAAATGGGATTGTTGATGCCATTTACTTTTGTGTTGTAACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATGACTCTTGGTGGGATGATCCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAAAAATCAGCTCCAGCGAGATCCTTCAGGAATCTGAGGCTCACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGACTCTTGTCTTTGTTGGAACTCTTTTCTTGACTGTGGTTGAGAAGCTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACTATCACGACTCTTGGATATGGGGATGAGAGCTTCTCTACAACAGCTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTAGCACAGTTCTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGAATCACTGGTAAATTGGGTTCTCAGCCGAAGCCTCACGTACTCAGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGCGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGAAACTTTTAAGAAGCTGGACATTGATCAATCAGGAAACCATAACTCTTGTAGAGCATTGGATGAGGTCGTCCTGCGACATAATCTAGAATCCCTTCACCTGCTCTTACACCATGAACTTCGGTTCCAACTTGGAAACCGCCTCCAAAGGCGACCATTGCCACCAAGAGTACAGATGTGGAGGCAAAGAGAGGCCAAAAGAAAGCTAGAATACTTAGAAACCGAGGAGCTGCATATACAAACAATGACAGAACCACTGAAACTGCTGCTACAACAGTTATTTGGTCTTTGTGTTGGAGAACCTTTGTTTGAATGTCCATGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAATAGAGAGAGAGAAAACAGAGAGGAATTTGCTATAAGTGATGATGATTCCTATGAGTCTCTCCTTTTCTGGTAA 1380 41.3 MDSGDVERSLLPKLSDSDKRKSLQRRKSNRHGSFSHSVENNNQPQNYDVISHQRIAVSQVSFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGMTLGGMILSKAADYIVEKQEILLVKAMYMRKKISSSEILQESEAHKLKYKFIMTGILLWTLVFVGTLFLTVVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQESLVNWVLSRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILETFKKLDIDQSGNHNSCRALDEVVLRHNLESLHLLLHHELRFQLGNRLQRRPLPPRVQMWRQREAKRKLEYLETEELHIQTMTEPLKLLLQQLFGLCVGEPLFECPWRRRRRRRRRNRERENREEFAISDDDSYESLLFW 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17477188 17479669 + CePI673135_01g011300.1 Cec01g1130 194347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1130 459 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 60 314 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Cec01g1130 459 SUPERFAMILY Voltage-gated potassium channels 178 276 - -
Cec01g1130 459 Gene3D - 57 153 - -
Cec01g1130 459 SUPERFAMILY EF-hand 273 331 IPR011992 -
Cec01g1130 459 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cec01g1130 459 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cec01g1130 459 MobiDBLite consensus disorder prediction 1 23 - -
Cec01g1130 459 Gene3D - 158 272 - -
Cec01g1130 459 FunFam Calcium-activated outward-rectifying potassium channel 1 59 154 - -
Cec01g1130 459 MobiDBLite consensus disorder prediction 1 41 - -
Cec01g1130 459 Pfam Ion channel 190 260 IPR013099 -
Cec01g1130 459 Pfam Ion channel 68 148 IPR013099 -
Cec01g1130 459 SUPERFAMILY Voltage-gated potassium channels 58 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1130 Cec-Chr1:17477188 Cec09g2220 Cec-Chr9:39112448 4.10E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1130 K05389 - csv:101214791 598.201