Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec01g1316 | ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTTTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTCTTGTCGGCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGACGGGAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAATAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTCCACTTAA | 1023 | 42.33 | MVYVNPFEDMGLRNHMADDNIFCFQSPTFIEWLKPHNPSSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFLSARCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEISCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHST | 340 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24607268 | 24609690 | + | CePI673135_01g013160.1 | Cec01g1316 | 194533 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec01g1316 | 340 | PANTHER | ZINC FINGER PROTEIN WIP2 | 27 | 328 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cec01g1316 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 184 | 211 | IPR013087 | - | |
Cec01g1316 | 340 | FunFam | Zinc finger protein WIP2 | 237 | 319 | - | - | |
Cec01g1316 | 340 | SUPERFAMILY | beta-beta-alpha zinc fingers | 170 | 207 | IPR036236 | - | |
Cec01g1316 | 340 | Pfam | Zinc finger, C2H2 type | 184 | 203 | IPR013087 | - | |
Cec01g1316 | 340 | Gene3D | Classic Zinc Finger | 183 | 206 | - | - | |
Cec01g1316 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 186 | 206 | IPR013087 | - | |
Cec01g1316 | 340 | Coils | Coil | 107 | 127 | - | - | |
Cec01g1316 | 340 | Gene3D | Classic Zinc Finger | 246 | 325 | - | - | |
Cec01g1316 | 340 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 267 | 291 | - | - | |
Cec01g1316 | 340 | SMART | c2h2final6 | 231 | 263 | IPR013087 | - | |
Cec01g1316 | 340 | SMART | c2h2final6 | 184 | 206 | IPR013087 | - | |
Cec01g1316 | 340 | SMART | c2h2final6 | 268 | 288 | IPR013087 | - | |
Cec01g1316 | 340 | MobiDBLite | consensus disorder prediction | 317 | 340 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec01g1316 | Cec-Chr1:24607268 | Cec04g0167 | Cec-Chr4:6582323 | 1.50E-84 | dispersed | |
Cec01g1316 | Cec-Chr1:24607268 | Cec02g2442 | Cec-Chr2:41628104 | 2.80E-83 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
28906 | None | None | None | None | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec01g1316 | - | - | - | 0.0 |