Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1316 ATGGTTTATGTTAACCCCTTTGAAGATATGGGTTTGAGAAATCATATGGCAGATGATAACATCTTTTGTTTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTCCTTCTCCCTCCATCTCTCTCTCGTCTTCGTCTTCGTCTATCTCCGACCGAGATTTAATCTCTCAGACGAGCGTCCAATGCGTTAATACAGGGTTAGTTCCTGATCAACAACATGAATTTTTCTTGTCGGCCCGATGCCTGCCTTTGTTCACCGAGACGGAGGCCTTGCCGAAGAACGACAAAGAATTAGGGGCTCGAGCTCAAGATCATGAAAGGAAATATTTGGGAATTAAAGAGGAGAATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGACGGGAAGAACTTGAATGTTTGTGTAAAGAAAGAAGAAATAAGCTGCCTGAAGAAAAGCTTCTCTAATTTTAACAATCAAGGAAGGTTTTGGATCCCAACACAGGCTCAGATCCTTGTTGGTCCTATGCAATTTACTTGCTCCATCTGCAACAAGTCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTTAGAGGAACACAGCCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTTCAAACCCATTACAAAAGAAAGCATGGTTCCAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAAAATTGTGGTAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACACAAAAGATCTCTTAAAGATCACATCAGATCCTTTGGCAAAGGCCACTCCCCATGCTCCTCTCTTGATGATGAATGCCTCACTGGGTCTGATCAAGAAGATCACTCCACTTAA 1023 42.33 MVYVNPFEDMGLRNHMADDNIFCFQSPTFIEWLKPHNPSSPSPSISLSSSSSSISDRDLISQTSVQCVNTGLVPDQQHEFFLSARCLPLFTETEALPKNDKELGARAQDHERKYLGIKEENEDMEKVEVGLHIGLPNVGDGKNLNVCVKKEEISCLKKSFSNFNNQGRFWIPTQAQILVGPMQFTCSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDQEDHST 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24607268 24609690 + CePI673135_01g013160.1 Cec01g1316 194533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1316 340 PANTHER ZINC FINGER PROTEIN WIP2 27 328 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cec01g1316 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Cec01g1316 340 FunFam Zinc finger protein WIP2 237 319 - -
Cec01g1316 340 SUPERFAMILY beta-beta-alpha zinc fingers 170 207 IPR036236 -
Cec01g1316 340 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Cec01g1316 340 Gene3D Classic Zinc Finger 183 206 - -
Cec01g1316 340 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Cec01g1316 340 Coils Coil 107 127 - -
Cec01g1316 340 Gene3D Classic Zinc Finger 246 325 - -
Cec01g1316 340 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 267 291 - -
Cec01g1316 340 SMART c2h2final6 231 263 IPR013087 -
Cec01g1316 340 SMART c2h2final6 184 206 IPR013087 -
Cec01g1316 340 SMART c2h2final6 268 288 IPR013087 -
Cec01g1316 340 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1316 Cec-Chr1:24607268 Cec04g0167 Cec-Chr4:6582323 1.50E-84 dispersed
Cec01g1316 Cec-Chr1:24607268 Cec02g2442 Cec-Chr2:41628104 2.80E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28906 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1316 - - - 0.0