Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1374 ATGGCGCTCTCTCTATCCCTACAACTTATCCGTTTCCCTCCTCAACCATTATCCTCATCCTCTCAACATCTTCTCATCTCTGACCTCGCCTCCGTCTCGCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCGCGGAGCTGCACGATGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGCGAATCGGAAGCGTTGGTGTCCGATGTGGACGGAGGGGGAGATCTTGAGGATGATATTGATATTGGTGTTCAGGAAGACAGCTCTGTGGCCACTGCTGCTTCTGCGCAGAAAAATTCTGTCTCGTCGCCGAGTGATTATCTGTCGCTTGCGATCCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGATGATGGAACCGTATCTACCAGGAAGGTTAACAGACGGCAACTATTGAAGTCAAGTGGGCTTCGTCCACGTGATATCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTCCGTGAACATGCTATTTTGCTTAATCTGGGATCATTGAGAGCAATAGCTATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCAGCAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACATTGGTTGAATTAGGGTCCAGGGCAGGGGCTCTTAGACAAATGCTTCTTGATCTTCTGGAGGATCCGCAAGAAATACGACGCATCTGTATTATGGGAAGAAATTGCACGCTTAATAAAAGAAATGATGATGTGGAGTGCTCTCTTCCTTTGGATAAGCAGATTGCGGATGAAGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCAGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGAGTGGAGTTGCTTCTCCAAGTTGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTCTGGTTAACAACAGCTGGGATAATTGTTGGGGCTCTAAGTACTTGTTCAGGTCATTCAACACTCAATCTAGGAGGCCTATATCCCAGTGATGAGGATGCAAATTGTGAAGGATCCATGGCACTTATCGACACTACTCTCTGCGACAACGACGGTCTCAGCACAGACGACAGTGTGAGGCAGTCGATGGCGTATGGTGAACTACAGTCGAGTAGAATGACACGAACAATGACGTGA 1518 45.92 MALSLSLQLIRFPPQPLSSSSQHLLISDLASVSRFFRSPCLSSLAPSRSCTMKLSSRTKCFSMSTEEEQWSESEALVSDVDGGGDLEDDIDIGVQEDSSVATAASAQKNSVSSPSDYLSLAIREQVYEVLEVKDDGTVSTRKVNRRQLLKSSGLRPRDIRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGALSTCSGHSTLNLGGLYPSDEDANCEGSMALIDTTLCDNDGLSTDDSVRQSMAYGELQSSRMTRTMT 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27562496 27573307 + CePI673135_01g013740.1 Cec01g1374 194591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1374 505 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 103 443 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cec01g1374 505 FunFam Magnesium transporter MRS2-11, chloroplastic 122 203 - -
Cec01g1374 505 Coils Coil 336 356 - -
Cec01g1374 505 Pfam Magnesium transporter MRS2-like 132 386 - -
Cec01g1374 505 Gene3D Magnesium transport protein CorA, transmembrane region 206 387 - -
Cec01g1374 505 FunFam Magnesium transporter MRS2-11, chloroplastic 205 387 - -
Cec01g1374 505 Gene3D - 119 203 - -
Cec01g1374 505 CDD Mrs2_Mfm1p-like 129 440 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1374 K16075 - - csv:101219314 724.931
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1297 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Cec08g1072 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Cec06g0671 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Cec07g0092 . 594 966 MRS2 Gene Family AT5G64560 68.8 1.8e-131 466.1
Cec02g0743 . 14 495 MRS2 Gene Family AT3G19640 64.6 7.8e-156 547.4
Cec05g1124 . 53 443 MRS2 Gene Family AT3G58970 69.1 4.9e-141 498.0
Cec02g0026 . 1 427 MRS2 Gene Family AT3G58970 60.4 4.9e-125 444.9
Cec08g1072 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Cec10g1297 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Cec06g0671 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Cec07g0092 . 594 928 MRS2 Gene Family AT5G09690 63.7 2.4e-108 389.0
Cec10g1297 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.6e-78 288.1
Cec06g0671 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Cec07g0092 . 630 888 MRS2 Gene Family AT5G09720 61.7 4.8e-76 281.6
Cec10g1297 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Cec08g1072 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Cec01g1374 . 16 439 MRS2 Gene Family AT5G22830 68.5 1.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41