Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec01g1397 | ATGTTTTCTCTTCCTTCACAAGATCCCTTGGTTTCATCTTCTAACGATCATCATGAAACCCTAGACAACCTTCTTTCTTCATATTCCCAATCAAGCAACTCTCTCCTTTATAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCTGTTGTCAACATAGCCATCTACAACCTTCAAAACTCAACTGAATCTCTGCCCCCGGCCTCATCGCCAGTGGCGACTGCGGCCGTCAACTCTTTGATTCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTCACATGTCAACAGATGGATAACCTCGTCGTGAATGCCTCCTTACACAACAACAACGTCGATAACAACCTCCACGATCAGCACCACCACCGTCAAGGTCCCGTTGACGATGACAATCGACGATCCAACACCCTTCTAGACATGGCCAACGACCATCATCACCAACATCAGGATTGGTACAACATGACGACATCTACTAATTATAACAACAACGACAACAACAACAGTAGAATAACGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTCGAGCTAGACGCTTCGGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGTGGGAAAGGGTTCAAGCGGGATGCCAACTTGAGAATGCACATGCGAGCGCATGGGGACGAGTACAAAGCAAGCGGGGCGTTGAGCAACCCAGAGAAGAGCCATAGAAGGGACTTGAATAATATAAGCAAGATGGGGACCAAATATTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACATGTCAAGTTTCAACCATTGAAATCATTGATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGCCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTATCTGATTTGAGAACTCATGAGAAGCACTGTGGAGATGTGAAATGGCTATGTTCTTGTGGAACAACATTTTCCAGAAAAGATAAGCTGATGGGACATGTTGCTTTGTTTGTCGGGCATGCTCCGGCGATCGGTTCATCGACAAAATTTTCGGGAAAATAG | 1074 | 43.11 | MFSLPSQDPLVSSSNDHHETLDNLLSSYSQSSNSLLYNLSILKEKLHQIQSVVNIAIYNLQNSTESLPPASSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLHNNNVDNNLHDQHHHRQGPVDDDNRRSNTLLDMANDHHHQHQDWYNMTTSTNYNNNDNNNSRITTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDLNNISKMGTKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFVGHAPAIGSSTKFSGK | 357 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 28020184 | 28021257 | - | CePI673135_01g013970.1 | Cec01g1397 | 194614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec01g1397 | 357 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 201 | 228 | IPR013087 | - | |
| Cec01g1397 | 357 | Pfam | Zinc finger, C2H2 type | 201 | 223 | IPR013087 | - | |
| Cec01g1397 | 357 | Gene3D | Classic Zinc Finger | 175 | 259 | - | - | |
| Cec01g1397 | 357 | SUPERFAMILY | beta-beta-alpha zinc fingers | 199 | 226 | IPR036236 | - | |
| Cec01g1397 | 357 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 203 | 223 | IPR013087 | - | |
| Cec01g1397 | 357 | SMART | c2h2final6 | 254 | 287 | IPR013087 | - | |
| Cec01g1397 | 357 | SMART | c2h2final6 | 292 | 314 | IPR013087 | - | |
| Cec01g1397 | 357 | SMART | c2h2final6 | 201 | 223 | IPR013087 | - | |
| Cec01g1397 | 357 | FunFam | Zinc finger protein 574 | 200 | 225 | - | - | |
| Cec01g1397 | 357 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 26 | 352 | IPR044300 | GO:0010044(InterPro)|GO:0010447(InterPro) | |
| Cec01g1397 | 357 | Gene3D | Classic Zinc Finger | 290 | 340 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec01g1397 | Cec-Chr1:28020184 | Cec09g1028 | Cec-Chr9:9976019 | 2.00E-60 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 28909 | PF00096 | zf-C2H2 | 9.00E-05 | CL0361 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec01g1397 | - | - | - | 0.0 |