Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1438 ATGGGATCAACAACAACAAACAGCCATTATTATAGCCCTTGTGCAGCTTGCAAATTCCTAAGAAGAAAATGCTTAGAAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTTGCGAAGCTCCTGAACGACATTCTTCCTCATCAACGACAAGATGCCGTCGTTTCGCTCGCCTATGAAGCCGAGGTGAGAATCAGAGATCCTGTTTATGGCTGTGTTGGAGCAATTTCTTTCCTCCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTTGCCTTTTTCTCTACTCTTGCACTGATTTCTCAACTCCCCTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATCTTAATCTTAATAATAATAATAATCATGATATTACTAATTCTTCTATGTATTTTAATGGAGGAATTTGA 501 39.92 MGSTTTNSHYYSPCAACKFLRRKCLEGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDILPHQRQDAVVSLAYEAEVRIRDPVYGCVGAISFLQKQVQRLQKELDAAKACLFLYSCTDFSTPLLPPHPQIITTPHPLIWNNNLNLNNNNNHDITNSSMYFNGGI 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29030843 29031343 + CePI673135_01g014380.1 Cec01g1438 194655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1438 166 Coils Coil 92 112 - -
Cec01g1438 166 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Cec01g1438 166 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Cec01g1438 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1438 Cec-Chr1:29030843 Cec11g1157 Cec-Chr11:23600517 4.40E-42 dispersed
Cec01g1438 Cec-Chr1:29030843 Cec10g1403 Cec-Chr10:28374804 1.10E-48 wgd
Cec01g1438 Cec-Chr1:29030843 Cec06g1923 Cec-Chr6:32617791 1.00E-51 wgd
Cec01g1438 Cec-Chr1:29030843 Cec09g2038 Cec-Chr9:37418146 4.20E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28912 PF03195 LOB 1.00E-41 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1438 - - - 0.0