Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1460 ATGAGGTTGATTTTGGGTAGTCCTTCATTCTTGCTATTGCATTGCGCCACCAACCACTGCTTCACCAACTTTCTCCTCGGCGGACGCTCCGAGGCCCTTCTCTTTTGCTTCGTCCTCTTCTCCGATCTCAGATCTCGAGCTCAAGCCTTCGAAATGCAGAGCTCTGCGGTCACCTTCTCGCCTTCTCTTCCTCTTCTCAATCCTCGCAGGCCTCATACTTCATCCTTCAGCTCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCTTCCTCAAATTCCAGCGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGCCGATCTTGGACTCTGTCTTCGTCTCCTTTTTCCTCCTCGAAACTCCGCCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCTACTGCGGTGCCGGATAGCTCAGGGGAGGCCGCGAGTGCTGGCGGAAGCCTAATGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTTCCTGTGACTGTCACTGCAGTTCAATTTGCCGTAGGCACTGTACTTGTTCTTCTCATGTGGGGACTTAATCTCTACAAAAGACCTAAGATTAGTGGTGCTCAGCTTGCGGCTATTCTGCCACTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTTGGGAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCCATGGAGCCATTTTTTTCAGTTGTCCTGTCAGCAATGTTTCTTGGAGAGACTCCTACTCCCTGGGTTGTTGCGTCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCATCCAATGTGACTAATCAATCTCGTAATGTCCTTAGCAAAAAGGTCATGGTGAAAAAAGAGGACTCAATTGACAACATCACCCTCTTTTCAATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGTGTCAAGTTCACTCCTGCATACCTTCAATCAGCTGGATTGAACATGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAGGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTTACCCACTCGGTCGGCAATTGTGTAAAGCGTGTTGTGGTCATCGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCTCTTGCTGGGGTTTTCCTTTATTCGAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACAGCTTAA 1413 47.98 MRLILGSPSFLLLHCATNHCFTNFLLGGRSEALLFCFVLFSDLRSRAQAFEMQSSAVTFSPSLPLLNPRRPHTSSFSSGCNSIRLSSSSSSNSSDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGEAASAGGSLMKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVVLSAMFLGETPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSRNVLSKKVMVKKEDSIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNMNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29244422 29248566 + CePI673135_01g014600.1 Cec01g1460 194677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1460 470 SUPERFAMILY Multidrug resistance efflux transporter EmrE 382 461 - -
Cec01g1460 470 Pfam Triose-phosphate Transporter family 169 458 IPR004853 -
Cec01g1460 470 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 168 468 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cec01g1460 470 PANTHER SOLUTE CARRIER FAMILY 35 162 459 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cec01g1460 470 SUPERFAMILY Multidrug resistance efflux transporter EmrE 213 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1460 Cec-Chr1:29244422 Cec05g0285 Cec-Chr5:2358662 8.30E-62 dispersed
Cec01g1460 Cec-Chr1:29244422 Cec09g2027 Cec-Chr9:37301289 5.80E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1460 K15283 - csv:101203848 707.597