Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1471 ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGATGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGACTGTTTACCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCACGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTTGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATACTTTTGTAACAACCCAACCTTCAAGTCTATCGAGATCGACTCCAACCCGTGCAGCTCATTCCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1053 46.15 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNTFVTTQPSSLSRSTPTRAAHSENTTDLYTDTALEAVENGNSPLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29377307 29380558 - CePI673135_01g014710.1 Cec01g1471 194688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1471 350 SMART ring_2 235 275 IPR001841 -
Cec01g1471 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 343 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cec01g1471 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cec01g1471 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cec01g1471 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cec01g1471 350 MobiDBLite consensus disorder prediction 296 327 - -
Cec01g1471 350 Pfam Ring finger domain 234 276 IPR001841 -
Cec01g1471 350 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1471 Cec-Chr1:29377307 Cec05g0101 Cec-Chr5:915188 1.90E-10 dispersed
Cec01g1471 Cec-Chr1:29377307 Cec06g1893 Cec-Chr6:32221457 1.50E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1471 K16284 - csv:101222360 694.115