Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1494 ATGGTCGGGCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTCTCAAGAGTTGGGGTTTTTGCCCAAGCTTGAAGAAGATGGTTCAACGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAACCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGGGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCACATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTTATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACACATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGTCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGACAGGTTGAAGAAAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTGGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 49.35 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVSQELGFLPKLEEDGSTPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTHIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAVSVDGRSAMLDANAVGCLVEILKEKDMDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLRQVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29572323 29573945 - CePI673135_01g014940.1 Cec01g1494 194711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1494 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D - 222 338 IPR011989 -
Cec01g1494 540 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Cec01g1494 540 MobiDBLite consensus disorder prediction 187 202 - -
Cec01g1494 540 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Cec01g1494 540 SUPERFAMILY RING/U-box 16 108 - -
Cec01g1494 540 Pfam U-box domain 31 61 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 SMART Ubox_2 33 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D - 339 497 IPR011989 -
Cec01g1494 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 PANTHER U BOX DOMAIN-CONTAINING 17 499 - -
Cec01g1494 540 MobiDBLite consensus disorder prediction 187 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1494 Cec-Chr1:29572323 Cec03g0157 Cec-Chr3:1536262 1.30E-10 dispersed
Cec01g1494 Cec-Chr1:29572323 Cec06g1869 Cec-Chr6:32030403 1.50E-91 wgd
Cec01g1494 Cec-Chr1:29572323 Cec09g1985 Cec-Chr9:36880247 1.70E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1494 - - - 0.0