Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1494 ATGGTCGGGCATGGCAATCACAGGCTGAAACTCTCCATCTTCCACCACCGATCTTCCTCAGACTCCAAACCCGAACGCCCAAAAGAGTATCCCGAAGAGTACCTCTGCCCAATTTCTAAGTCTTTAATGGCGGACCCAGTTGTCGTCTCCTCTGGTCACACCTTCGAGCGTCTCTCTGTTCAAGTTTCTCAAGAGTTGGGGTTTTTGCCCAAGCTTGAAGAAGATGGTTCAACGCCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAGATTCACTATTCTCAAATGGTGCGATAATAACGGAATCGAACATCCACAACCCCCTGATTACAGCTCCATTGAACTCATTGTTCGTCGATTAATGGAGAAGCAGAGGCAGGAGAATCGATTCGAAGCTTCTGATAGCGAGTTGATTAGGGGCGTCGCCGATAAACCGCAGGGGGTTGCTGTTCATGCGACCACCGAGGTTGGGCTACGACTCAACCGATTTCAACTCGACTCGCCGCCGCAGAAGGAGGAGATCGTACGAGAAAGTACTATTTTGCCCTTCAAAACGCAACCCTCTAGTTATGCTGCTCATTCTTCTTCCTCTTCACATGGAAGCTTCGATAGAGATCCTAATCACAGAGGATATTCTGATTCGTATTCCCCAAATTCAGAAGAAGAATCTATACTTATTTTGAAATTCAGAAGCAACGATGAATTCGAGCAACGAGAAGGAGTGATATCCCTAAGAAAATTAACTAAATCCAACGAATCGATTAGGGTTTCTTTATGCACAAAGGAATTCCTCGCCGCCCTACTTCCTTTGGTTTTGTCCCGATCTACACATATCCAGATCAACGCAGTAGCTTCCGTCGTGAATCTCTCTCTCGAGAAACCCAACAAATTGAAGATCGTACGGGCAGGATTTGTTCCGCCATTAATCGACGTTTTAGACGGCAGAAGCGCCGAAGCTCAAGAACACGCCGCCGGTGCTCTGTTCAGTTTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATTCTCGGCGCGTTACCGGTGCTGATGAATACGCTCCGAGCCGACAGCGAGAGAACGAGGAACGATTCAGCTCTTTGTTTGTACCATTTGACACTAAACCCTAGCAACCGAGTTAAACTGGTGAAACTCGGCGCCGTACCGATTCTGCTGTCGTTGACGAGAATCGAAGGTTGTGCGAGCCGAATACTTCTGATTCTGTGCAATATCGCGGTCTCTGTGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGTTGTTTGGTGGAGATATTGAAGGAGAAGGACATGGATTCCGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAAAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTGAGACAGGTTGAAGAAAGGGGAAGCGAGCGGGCAAGGGAAAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGAAGCGGTTCGGTCGAGATTGAAGGCGTCGGCCGAAATGGGCTGGACGCTGGTGGAGTCAGCTGGACCGGTCGGGTTGGTGCTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1623 49.35 MVGHGNHRLKLSIFHHRSSSDSKPERPKEYPEEYLCPISKSLMADPVVVSSGHTFERLSVQVSQELGFLPKLEEDGSTPDFSSVITNRNMRFTILKWCDNNGIEHPQPPDYSSIELIVRRLMEKQRQENRFEASDSELIRGVADKPQGVAVHATTEVGLRLNRFQLDSPPQKEEIVRESTILPFKTQPSSYAAHSSSSSHGSFDRDPNHRGYSDSYSPNSEEESILILKFRSNDEFEQREGVISLRKLTKSNESIRVSLCTKEFLAALLPLVLSRSTHIQINAVASVVNLSLEKPNKLKIVRAGFVPPLIDVLDGRSAEAQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRADSERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTRIEGCASRILLILCNIAVSVDGRSAMLDANAVGCLVEILKEKDMDSESTRENCVVALYALSQGGFRFKGLAKEAGAVEVLRQVEERGSERAREKAKRILQMMRTGGSGSVEIEGVGRNGLDAGGVSWTGRVGAGLNRYSTNTTKF 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29572323 29573945 - CePI673135_01g014940.1 Cec01g1494 194711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1494 540 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 SMART arm_5 375 413 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D - 222 338 IPR011989 -
Cec01g1494 540 Pfam Armadillo/beta-catenin-like repeat 295 332 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
Cec01g1494 540 MobiDBLite consensus disorder prediction 187 202 - -
Cec01g1494 540 SUPERFAMILY ARM repeat 227 497 IPR016024 -
Cec01g1494 540 SUPERFAMILY RING/U-box 16 108 - -
Cec01g1494 540 Pfam U-box domain 31 61 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 SMART Ubox_2 33 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Cec01g1494 540 Gene3D - 339 497 IPR011989 -
Cec01g1494 540 ProSiteProfiles U-box domain profile. 29 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec01g1494 540 PANTHER U BOX DOMAIN-CONTAINING 17 499 - -
Cec01g1494 540 MobiDBLite consensus disorder prediction 187 218 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1494 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1494 Cec-Chr1:29572323 Cec03g0157 Cec-Chr3:1536262 1.30E-10 dispersed
Cec01g1494 Cec-Chr1:29572323 Cec06g1869 Cec-Chr6:32030403 1.50E-91 wgd
Cec01g1494 Cec-Chr1:29572323 Cec09g1985 Cec-Chr9:36880247 1.70E-79 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008896 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33