Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1499 ATGGGAATTATGGAATACCATCAAACTTTTCATAATTCCAACACATATTTTGATCAATCTTACTCTTCTTCTTCTTCTTCTTCATGTCTCACTACTTTCAAAGGCCATTCTTCTTACATCTCTTCTCTAGCTCTCGCCGGAAAATTCCTCTACTCTGGTTCCTCCGACAAAGAAATCCGATCATGGAGACGAAACCCATCACAAAACTGTGAAGAAAACCAGGAAGAGTTTCAGAACACTATGGTTACAGCCGGACATGGCGCAGTGAAATCCCTTGTGGTTTCATCTGACAAACTTTACAGTGCCCATCAAGACCACAAAATTCGAGTTTGGAAAATCTCTAACGATTACGATCACCATCAAAAGTACACACGTTTAGCTACCCTCCCGACGCTCGGCGATCGGACGGCCAGGCTTTTGACACCCAATAATCAGGTCCAGATCCGACGGCACAAGAAATGCACTTGGGTTCATCATGTTGATACCGTTTCAGCTCTTTCTCTGTCAAACGACGAGTCGCTTCTCTATTCCGTCTCGTGGGATCGGACCCTCAAAATCTGGCGGACTTCCGATTTTAAATGCTTGGAGTCCATCGCCGGAGCTCACGACGATGCGATAAACGCCGTCGCGCTCGCCGGAGACGGTGACGTGTATACTGGATCGACGGACAAGAGGATCAAAGTCTGGAGGAAAAACCCAGATGGGAAAAGGCATTTTTTGGTCCAAACACTCGAGAAACACAGCTCCGGAATTAATGCGTTGGCTCTCGCCGGCGATGGGTTGGTTTTATTTTCCGGCGCCTGCGACAAGTCGGTTTTGGTTTGGGAGAAGGAGGAAGGGGGTGGGTTAATGGAGTTGGTGGGTGTGTTGAGAGGCCATTCGAAGGCCATATTGTGTTTGGCTGTGGTGTTGGATTTGGTTTGTAGTGGTTCGGCGGACAAGACGACCAGAATTTGGAAGAAGGTCGTCGCCGGGAATTACGTGTGTTTGAGGGTTTTGGAAGGGCATAACGGTCCCGTCAAGTGTTTGGCGGCGGCGGTTGATCGGTGCAACCAAACCGACATGTCGTTTATGGTTTATAGTGGTGGTTTGGATTGTGATATCAAGGCGTGGCAGATTTCTGTTCCTCTTGTTTAA 1137 47.93 MGIMEYHQTFHNSNTYFDQSYSSSSSSSCLTTFKGHSSYISSLALAGKFLYSGSSDKEIRSWRRNPSQNCEENQEEFQNTMVTAGHGAVKSLVVSSDKLYSAHQDHKIRVWKISNDYDHHQKYTRLATLPTLGDRTARLLTPNNQVQIRRHKKCTWVHHVDTVSALSLSNDESLLYSVSWDRTLKIWRTSDFKCLESIAGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALAGDGLVLFSGACDKSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLDLVCSGSADKTTRIWKKVVAGNYVCLRVLEGHNGPVKCLAAAVDRCNQTDMSFMVYSGGLDCDIKAWQISVPLV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29612936 29614072 - CePI673135_01g014990.1 Cec01g1499 194716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1499 378 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 374 IPR045182 -
Cec01g1499 378 SMART WD40_4 326 372 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 149 188 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 76 112 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 191 230 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 283 320 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 237 276 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SMART WD40_4 26 63 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 SUPERFAMILY WD40 repeat-like 28 374 IPR036322 GO:0005515(InterPro)
Cec01g1499 378 Gene3D - 128 376 IPR015943 GO:0005515(InterPro)
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 320 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 244 276 - -
Cec01g1499 378 CDD WD40 29 372 - -
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 197 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 285 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Gene3D - 20 127 IPR015943 GO:0005515(InterPro)
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 229 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 156 187 - -
Cec01g1499 378 Pfam WD domain, G-beta repeat 328 371 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 82 111 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 285 319 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 194 229 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 28 62 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 Pfam WD domain, G-beta repeat 155 187 IPR001680 GO:0005515(InterPro)
Cec01g1499 378 FunFam BnaA09g28200D protein 146 234 - -
Cec01g1499 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 33 62 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1499 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0764 Cec-Chr1:8400276 Cec01g1499 Cec-Chr1:29612936 1.30E-42 dispersed
Cec01g1499 Cec-Chr1:29612936 Cec06g1952 Cec-Chr6:32811577 3.90E-46 dispersed
Cec01g1499 Cec-Chr1:29612936 Cec05g2840 Cec-Chr5:38648967 3.20E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013452 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 0 0 1 2 1 0 26