Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1501 ATGCTGAAGAAAAAGATCTGCGGCGGCGGCGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGTGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1191 43.16 MLKKKICGGGDDDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSVYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWYSEAVKKPIQIS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29622401 29626084 - CePI673135_01g015010.1 Cec01g1501 194718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1501 396 SUPERFAMILY Winged helix DNA-binding domain 172 251 IPR036390 -
Cec01g1501 396 PANTHER TRANSCRIPTION FACTOR E2F 22 369 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cec01g1501 396 SMART E2F_TDP_2 38 103 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 SMART E2F_TDP_2 170 250 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 SUPERFAMILY Winged helix DNA-binding domain 37 101 IPR036390 -
Cec01g1501 396 Pfam E2F/DP family winged-helix DNA-binding domain 171 250 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 Pfam E2F/DP family winged-helix DNA-binding domain 39 103 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 Gene3D - 33 106 IPR036388 -
Cec01g1501 396 Gene3D - 165 252 IPR036388 -
Cec01g1501 396 FunFam E2F transcription factor-like E2FE 165 252 - -
Cec01g1501 396 MobiDBLite consensus disorder prediction 146 164 - -
Cec01g1501 396 MobiDBLite consensus disorder prediction 121 168 - -
Cec01g1501 396 FunFam E2F transcription factor 8 33 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1501 Cec-Chr1:29622401 Cec02g2351 Cec-Chr2:40745891 1.80E-09 dispersed
Cec01g1501 Cec-Chr1:29622401 Cec06g1865 Cec-Chr6:31998011 8.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28914 PF02319 E2F_TDP 2.40E-20 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1501 K09391 - csv:101219210 707.597