Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1501 ATGCTGAAGAAAAAGATCTGCGGCGGCGGCGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCTGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATTGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGTGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1191 43.16 MLKKKICGGGDDDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSVYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWYSEAVKKPIQIS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29622401 29626084 - CePI673135_01g015010.1 Cec01g1501 194718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1501 396 SUPERFAMILY Winged helix DNA-binding domain 172 251 IPR036390 -
Cec01g1501 396 PANTHER TRANSCRIPTION FACTOR E2F 22 369 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Cec01g1501 396 SMART E2F_TDP_2 38 103 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 SMART E2F_TDP_2 170 250 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 SUPERFAMILY Winged helix DNA-binding domain 37 101 IPR036390 -
Cec01g1501 396 Pfam E2F/DP family winged-helix DNA-binding domain 171 250 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 Pfam E2F/DP family winged-helix DNA-binding domain 39 103 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cec01g1501 396 Gene3D - 33 106 IPR036388 -
Cec01g1501 396 Gene3D - 165 252 IPR036388 -
Cec01g1501 396 FunFam E2F transcription factor-like E2FE 165 252 - -
Cec01g1501 396 MobiDBLite consensus disorder prediction 146 164 - -
Cec01g1501 396 MobiDBLite consensus disorder prediction 121 168 - -
Cec01g1501 396 FunFam E2F transcription factor 8 33 105 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1501 K09391 - - csv:101219210 707.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1501 Cec-Chr1:29622401 Cec02g2351 Cec-Chr2:40745891 1.80E-09 dispersed
Cec01g1501 Cec-Chr1:29622401 Cec06g1865 Cec-Chr6:31998011 8.20E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec10g0922 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.3e-60 228.0
Cec02g2351 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.2 1.1e-114 410.6
Cec04g1183 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.1 5.1e-96 348.6
Cec08g1486 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.4 8.8e-56 214.9
Cec02g2351 . 21 441 E2F-DP Transcription Factor Family AT2G36010 54.9 2.0e-119 426.4
Cec04g1183 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.4 3.8e-118 422.2
Cec02g2351 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.3e-63 238.4
Cec08g1486 . 151 400 E2F-DP Transcription Factor Family AT1G47870 53.6 6.3e-63 238.4
Cec01g1501 . 34 391 E2F-DP Transcription Factor Family AT3G48160 56.4 2.4e-102 369.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28914 PF02319 E2F_TDP 2.40E-20 CL0123 Cec TF