Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1526 ATGGGCATGTTTGTTTTGGTTGCTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACATGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTTGGAGTTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCAAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCGAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTGGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTCTGCACGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCTAGAGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGATAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAATCAAGTTTTACAGTTTCTCGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTACGAGTCTCAGTCTGATTATTCTTGA 1806 42.3 MGMFVLVASLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLHGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACQTSLGFPAVLPHAESDEASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDRVFERELEILGCIKHINLVNLRGYCGLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMNQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29863629 29868061 + CePI673135_01g015260.1 Cec01g1526 194743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1526 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec01g1526 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1526 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cec01g1526 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1526 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cec01g1526 601 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515(InterPro)
Cec01g1526 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cec01g1526 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cec01g1526 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1526 601 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 180 584 IPR050647 -
Cec01g1526 601 SUPERFAMILY L domain-like 26 206 - -
Cec01g1526 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cec01g1526 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cec01g1526 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cec01g1526 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Cec01g1526 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
Cec01g1526 601 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1526 Cec-Chr1:29863629 Cec11g1765 Cec-Chr11:31850201 7.80E-81 dispersed
Cec11g1436 Cec-Chr11:28520153 Cec01g1526 Cec-Chr1:29863629 1.90E-46 dispersed
Cec05g1747 Cec-Chr5:29074561 Cec01g1526 Cec-Chr1:29863629 2.70E-66 transposed
Cec07g1228 Cec-Chr7:27777961 Cec01g1526 Cec-Chr1:29863629 5.50E-135 transposed
Cec11g1677 Cec-Chr11:31039582 Cec01g1526 Cec-Chr1:29863629 2.40E-136 transposed
Cec01g1526 Cec-Chr1:29863629 Cec11g0147 Cec-Chr11:1732035 5.70E-34 wgd
Cec01g1526 Cec-Chr1:29863629 Cec06g1834 Cec-Chr6:31757981 1.30E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71695 PF00069 Pkinase 2.20E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1526 - - - 0.0