Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1533 ATGAGAGAAACAGACACCACCATTATTGTTGTGATTAAACTGCTAATGATATTTGGTTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAAACAAGTTCACAGATACTTTGATGCTGCAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTCTGGATCATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGATGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCTTCGGAAAACGAATGGAAATCTTGGAACTGGAGTTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACATTATACATTCGAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCCTGTTAG 1323 42.4 MRETDTTIIVVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNKQVHRYFDAANNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMMDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASENEWKSWNWSSEGDLMMNGAFFIQSGNPIKRYSKKDIIHSKPGTFVTRLTRFAGPLKCRKNQPC 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29916046 29917730 + CePI673135_01g015330.1 Cec01g1533 194750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cec01g1533 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
Cec01g1533 440 Gene3D - 92 433 IPR012334 -
Cec01g1533 440 SUPERFAMILY Pectin lyase-like 93 431 IPR011050 -
Cec01g1533 440 SMART amb_all 167 364 IPR002022 -
Cec01g1533 440 Pfam Pectate lyase 179 358 IPR002022 -
Cec01g1533 440 PANTHER PECTATE LYASE 18-RELATED 22 437 IPR045032 GO:0030570(InterPro)
Cec01g1533 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1533 Cec-Chr1:29916046 Cec08g0930 Cec-Chr8:21099033 8.00E-176 dispersed
Cec01g1533 Cec-Chr1:29916046 Cec10g1498 Cec-Chr10:29345860 1.60E-179 wgd
Cec01g1533 Cec-Chr1:29916046 Cec05g2688 Cec-Chr5:37456422 2.80E-176 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1533 K01728 - csv:101218812 810.831