Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1559 ATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTACGGCCATGGAAGTTACGGCCGACGAGGACACGGTTATGGTCATGGTTATGGTTATGGTCGAAGGGGGGCCGACACGGGCAGAGCTGCATCGGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCGGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCAGGAATATCAGAATTACACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGGAGTTTAGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACACACCAGCCCTTAGCTCCTGAGGATTACTGA 861 51.45 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRRGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30162758 30164689 - CePI673135_01g015590.1 Cec01g1559 194776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1559 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Cec01g1559 286 PANTHER AQUAPORIN-8 5 276 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cec01g1559 286 CDD MIP 21 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 NCBIfam MIP family channel protein 25 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cec01g1559 286 FunFam Probable aquaporin TIP1-1 66 282 - -
Cec01g1559 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Cec01g1559 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1559 Cec-Chr1:30162758 Cec10g2002 Cec-Chr10:34803829 4.90E-73 dispersed
Cec01g1559 Cec-Chr1:30162758 Cec04g1088 Cec-Chr4:30392241 6.30E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1559 K09873 - csv:101208863 495.738