Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1580 ATGCTGGCTGATCTCTCTTCTCCTTCACTTCCTTGTTTTGAGCCTTTGTCTAATTGCTTTGAAAACAATGGAACCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCCGATGCAGAGGTGGTATCTCTCTCTCCAAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAATCAAGGGTTTCAAAGAGATCAGAATCTACAGATGCATCGACGTCGACACAAGGTGCCATGGAAGTTATTGAAAAGAACGGAGGCGACGGCCGTAGTGAGAAAACGGGTGTTCGTTTGCCCGGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTAGGGATAAAGAAGCACTTTAGAAGAAAACACAGTAACCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAGGCTCATCTCAAAACTTGTGGAACTAGAGGCCATTCTTGTGACTGTGGTCGAGTTTTCTCCAGGGTTGAGAGTTTCATAGAACATCAAGATAGTTGCAAATTGGGTCATCATCAACAACAATCAGAACAAAAAATTCCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAAACAAAACCAAACATTTAGTACTACAATTGATCATCATCATCATGATGGAGCTGACAAATATTCAACAAAAACAACAATAATTCCCCAGAGAATTATTAGCCATAATCATCATCAAAATTTAGACCTTCAACTTTCCACAAATTCAACTTCCATTCATGTTTCAGTTTCTCCAAAAAGACACGAAAATTACTCAACCCATTTGCAACTTTCGATTGGTTCTTGCAATTATGGTGAGAAAAATGATCATGATAATAATAGCAACAATAATGATGATGACGAGAAATTGGGTTTTTTGAGGCTGAAAGAGGAAGCTAAAGAACAAATGAGAGTGGCAATGGAGGAGAAAGCTGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAAATTGAAATGGCTGAAAAGGAATTGGTAAATGCCAAGAGAATGAGACAACAAGCACAAGCTGAGTTACAAAGAGCCCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTCCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCCCTTGCCTAAAATTTGA 1224 39.3 MLADLSSPSLPCFEPLSNCFENNGTNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEATAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQQSEQKIPCLSRTASSPTPSPSSDTNFSFLKQNQTFSTTIDHHHHDGADKYSTKTTIIPQRIISHNHHQNLDLQLSTNSTSIHVSVSPKRHENYSTHLQLSIGSCNYGEKNDHDNNSNNNDDDEKLGFLRLKEEAKEQMRVAMEEKAVAEEARNEAKKQIEMAEKELVNAKRMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHPLPKI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30412475 30414643 + CePI673135_01g015800.1 Cec01g1580 194797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1580 407 MobiDBLite consensus disorder prediction 195 218 - -
Cec01g1580 407 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 369 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec01g1580 407 SMART c2h2final6 100 130 IPR013087 -
Cec01g1580 407 SMART c2h2final6 136 163 IPR013087 -
Cec01g1580 407 SMART c2h2final6 57 79 IPR013087 -
Cec01g1580 407 Gene3D Classic Zinc Finger 44 132 - -
Cec01g1580 407 MobiDBLite consensus disorder prediction 295 314 - -
Cec01g1580 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cec01g1580 407 Coils Coil 322 384 - -
Cec01g1580 407 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cec01g1580 407 MobiDBLite consensus disorder prediction 23 43 - -
Cec01g1580 407 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Cec01g1580 407 FunFam protein indeterminate-domain 12-like 36 106 - -
Cec01g1580 407 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
Cec01g1580 407 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1580 Cec-Chr1:30412475 Cec03g1765 Cec-Chr3:35936537 3.00E-60 dispersed
Cec01g0687 Cec-Chr1:7648167 Cec01g1580 Cec-Chr1:30412475 8.00E-95 transposed
Cec01g1817 Cec-Chr1:32616841 Cec01g1580 Cec-Chr1:30412475 5.20E-114 transposed
Cec01g1580 Cec-Chr1:30412475 Cec10g2045 Cec-Chr10:35188726 1.10E-57 wgd
Cec01g1580 Cec-Chr1:30412475 Cec11g0084 Cec-Chr11:1068620 9.10E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28920 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1580 K25871 - csv:101210748 739.569