Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1608 ATGTGGATGATGGGTTACAGTGACGCTACAGATTTGAACTTCCCTTCCGATAACTCTTTCAATTCTCGCAAACTTAGACCTCTAATTCCTCGCCCTCTCTCTTCTTCTTCCTCTTCCTCCATTAACAATCTCATCCCCACCAACGATTTCTTCTCCCAATTTCATCACATGGCGACGGTGACGGATCAAAGTAAGAGAGAGTTGAACAATGTGTCGTCGTTGTCACCGCCTGTGGTGGTGAGCTCCCGGTGGAATCCGACGCCTGAGCAGTTGAGAGTGTTGGAGGAATTGTATCGGCGTGGGACTCGAACCCCCTCTGCCGATCAAATTCAACATATCACTGCTCAGCTTCGTCGTTACGGTAAGATTGAAGGTAAGAATGTGTTCTATTGGTTTCAAAATCATAAAGCTAGAGAACGACAGAAACGTCGTCGTCAGATGGAATCCGCCATCACTGCCGCCGACCTCTCCACTCGCGACGCCGAAATCCTCGAAAGGAAAGATTCAGGGTCGGGCAGGACAGTGTATGAAGAACAGACCAAAAACTGGGTGCCCTCTACAAACTGCAGTACACTTCCGGAGGAATCTGTTCCAATTCAAAGGGCGGCAAAAGGTAGTGTAATTGGAGGAGCAGATTGCAGAACAGAAAATGGATGGATTCAATTCGAGGAATTGCACCAAATAAGGAATAACAACACCAACACCAACAACAACTTTGCTGAAAAAAATACCAATAACATCAACAACAATATTAACAATTTAGCCTCCTTACAATTGATGCATTGTCCGGCAGCCGCTCTCCGTGGTGGCGGCAGCGGCAGCCAACTAATGATGAACATTGCCCCCATCACCACCACAGCCACAGTGACAACAATAATGCACCCAAAATCTCATAGAAGAAGTAATATTTCAGGTAATTTTAATATAATTGGAGCCTACACTCAAAATGGGGTTGAAGAATTGGAAGAAATAGAAGAAGAATTAGAAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGGTGTGGGGAATCTGAAACCCTACAACTTTTTCCATTGTGCAGTGACACAAGAAATGGTGAGATTATTGGTGGCCAAAATGGGTGTGAAACAGTGGAAAATTCAGCCATGAATAGTACTAATCTGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 1191 44.84 MWMMGYSDATDLNFPSDNSFNSRKLRPLIPRPLSSSSSSSINNLIPTNDFFSQFHHMATVTDQSKRELNNVSSLSPPVVVSSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAITAADLSTRDAEILERKDSGSGRTVYEEQTKNWVPSTNCSTLPEESVPIQRAAKGSVIGGADCRTENGWIQFEELHQIRNNNTNTNNNFAEKNTNNINNNINNLASLQLMHCPAAALRGGGSGSQLMMNIAPITTTATVTTIMHPKSHRRSNISGNFNIIGAYTQNGVEELEEIEEELEEEEEEGGGGGGGGCGESETLQLFPLCSDTRNGEIIGGQNGCETVENSAMNSTNLTPLQFFEFLPLKN 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30740878 30743825 + CePI673135_01g016080.1 Cec01g1608 194825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1608 396 SMART HOX_1 79 146 IPR001356 GO:0003677(InterPro)
Cec01g1608 396 Pfam Homeodomain 82 141 IPR001356 GO:0003677(InterPro)
Cec01g1608 396 Coils Coil 314 334 - -
Cec01g1608 396 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 76 392 IPR044555 GO:0003700(InterPro)|GO:0099402(InterPro)
Cec01g1608 396 SUPERFAMILY Homeodomain-like 81 148 IPR009057 -
Cec01g1608 396 CDD homeodomain 83 143 IPR001356 GO:0003677(InterPro)
Cec01g1608 396 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677(InterPro)
Cec01g1608 396 Gene3D - 81 148 - -
Cec01g1608 396 FunFam WUSCHEL-related homeobox 4 81 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1608 Cec-Chr1:30740878 Cec03g0160 Cec-Chr3:1585439 1.30E-23 dispersed
Cec04g2047 Cec-Chr4:38559155 Cec01g1608 Cec-Chr1:30740878 1.40E-14 transposed
Cec08g1665 Cec-Chr8:27970519 Cec01g1608 Cec-Chr1:30740878 3.00E-24 transposed
Cec01g1608 Cec-Chr1:30740878 Cec06g1636 Cec-Chr6:29965907 1.00E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28924 PF00046 Homeodomain 1.60E-19 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1608 - - - 0.0