Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1609 ATGAGAGTATGTCTGAGATCTCTTGTAGCTCTCACTCTCTACACCCTCTTGATTTCCCACATTTCAGTTTTGGTCTCTGCCACTACAATAACACTCTACAACAAATGCCCTCATCCAGTTTGGCCTGGCATTCAGCCCAGCGCTGGTAAGCCCTTGTTGGCTCGTGGTGGCTTCAAGCTCCCACCCAACAAGGCTTACTCTTTACGCCTTCCAGCCCTTTGGTCTGGCCGCTTCTGGGGCCGCCATGGCTGTGCTTTTGACGCATCTGGAAGAGGAAAGTGCGCTACAGGGGATTGTGGTGGTGCTCTCTTCTGCAATGGCATTGGAGGCACTCCACCAGCCACTCTTGCCGAGATTACACTTGGAAATGACCAAGATTTCTATGATGTGAGTCTTGTTGATGGCTACAATCTGGCTATTTCCATTACTCCGTCTAAAGGCTCAGGGAAATGTAGCTATGCTGGCTGTGTGAGTGACCTTAACATGATGTGTCCTGTGGGTTTACAAGTTAGATCTCATGATAACAGGAGAGTGGTGGCCTGTAAAAGTGCTTGCTTTGCATTCAATTCTCCAAGGTATTGCTGCACAGGCAGCTTTGGGAATCCACAATCGTGCAAGCCAACTGCTTATTCAAAGATCTTTAAGGCTGCTTGTCCGAAGGCTTACTCTTATGCTTATGATGATCCCACTAGCATTGCAACTTGCACTGGTGGCAACTATTTGGTCACTTTTTGCCCTCATCACGGTTAG 750 48.27 MRVCLRSLVALTLYTLLISHISVLVSATTITLYNKCPHPVWPGIQPSAGKPLLARGGFKLPPNKAYSLRLPALWSGRFWGRHGCAFDASGRGKCATGDCGGALFCNGIGGTPPATLAEITLGNDQDFYDVSLVDGYNLAISITPSKGSGKCSYAGCVSDLNMMCPVGLQVRSHDNRRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSKIFKAACPKAYSYAYDDPTSIATCTGGNYLVTFCPHHG 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30752516 30753374 + CePI673135_01g016090.1 Cec01g1609 194826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1609 249 PIRSF PR5 1 249 IPR001938 -
Cec01g1609 249 SUPERFAMILY Osmotin, thaumatin-like protein 28 247 IPR037176 -
Cec01g1609 249 CDD TLP-PA 29 245 - -
Cec01g1609 249 PANTHER OS03G0233200 PROTEIN 17 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cec01g1609 249 SMART tha2 30 246 IPR001938 -
Cec01g1609 249 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Cec01g1609 249 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Cec01g1609 249 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Cec01g1609 249 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Cec01g1609 249 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cec01g1609 249 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
Cec01g1609 249 Gene3D Thaumatin 28 246 IPR037176 -
Cec01g1609 249 ProSiteProfiles Thaumatin family profile. 27 248 IPR001938 -
Cec01g1609 249 FunFam Thaumatin-like protein 1a 28 246 - -
Cec01g1609 249 Pfam Thaumatin family 34 246 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1609 Cec-Chr1:30752516 Cec08g1582 Cec-Chr8:27372252 4.70E-72 dispersed
Cec05g1153 Cec-Chr5:10436064 Cec01g1609 Cec-Chr1:30752516 8.30E-60 transposed
Cec09g0433 Cec-Chr9:3694447 Cec01g1609 Cec-Chr1:30752516 2.00E-77 transposed
Cec10g1488 Cec-Chr10:29256667 Cec01g1609 Cec-Chr1:30752516 5.20E-61 transposed
Cec01g1609 Cec-Chr1:30752516 Cec10g2134 Cec-Chr10:35909651 1.20E-62 wgd
Cec01g1609 Cec-Chr1:30752516 Cec10g1996 Cec-Chr10:34747035 8.00E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g213 Blo04g00849 Blo16g00113 . . . Bpe13g00376 . . Cmo13g01030 Cmo18g00053 . . . . . Cpe20g00148 . . . . . . . . . . . . . . . . . . . Lsi02g00229 Csa01g00710 Chy12g01400 Cme12g01834 . . Bda11g01787 . . . Bma03g00919 . Sed08g1361 . . Cma13g00995 Cma18g00070 Car13g00828 Car18g00061 Cpe09g01116 . Bhi08g01289 Tan05g2196 Cmetu04g1577 Lac10g0286 Hepe07g2357 . . Cla04g01051 Cam04g1094 Cec01g1609 Cco01g1655 Clacu04g1120 Cmu04g1104 Cre01g1403 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001931 3 2 2 2 1 2 2 2 2 3 2 2 4 2 2 4 2 0 4 2 2 2 2 2 2 2 2 3 2 3 67