Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1619 ATGTTGAAGGATCCATGGAGCCCGAGAAGCTCAACCTTTAAAACAATCAGTCTGCATCCTAATTTAGAAGAAGCATTAGTTGTTGATTTTATTGAACCTGATGGAAGCTGGCATGTGAACAAACTAGAAGAATCAGGCACTATGATAGAAAAAGAAGATACTCACTTCATCTTACCTCGTGAAGCTTTCTTCCTGCTCACTGCGTTACGAGAAACCCTAGACTTACTTCTTCGCAGCTTACGGCCACTGTTCCATGGAATTCTTGATTCTTTGACACCGTTGATCTTTGCCGCTATATTAGCTTACGCGGAATCTGTAGTTTTATTCATTTATATCGAGGAGGATATTCGTGCATTAGAACTTGATCCACCAGATGTTAATGGGGTTCCTAATCCAGATGCAAAGATGGAGGAAGTTGTGAAATCCGATAATCTGGAAGAAGATGCAAGGACAGAAGAAATTGTGAAGTCCGACGAAGAGGACCATCCCCAGCAAGCCCAAGCCATCCACGTTGAAGAACAAGCGAAGGAGAACATATCTGCTAAGGAGAAGGAAATTTCTTCAACTGAAAATGAAGATGAAGGGGATGTGGAGTTAGACCGCAAAAGACACTTGAATGTTGTGTTCATTGGTCATGTTGATGCTGGTAAGTCTACAATTGGAGGCCAGATTCTTTTCCTTAGCAATCAGGTTGATGAGCGTACAATCCAAAAGTACGAAAAAGAAGCAAAAGACAAAAGCAGAGAAAGCTGGTACATGGCGTATATCATGGACACAAATGAAGAGGAGAGAGTTAAGGGGAAAACTGTTGAAGTGGGAAGAGCGCATTTTGAAACCGAGACCACAAGGTTTACAATTTTGGATGCTCCGGGTCACAAAAGTTATGTCCCGAATATGATCAGTGGGGCATCCCAAGCTGATATAGGGGTTCTGGTAATTTCTGCTAGGAAAGGAGAATTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTTTTGCTGGCAAAGACTTTGGGTGTTGCTAAGCTTCTTGTTGTGGTGAATAAGATGGATGATCACACAGTAGAATGGTCAAAAGAAAGGTATGATGAGATAGAGTCTAAGATGGCACCCTTCTTGAAGTCATCTGGTTACAATGTAAAGAAAGATGTCCAATTTTTACCTATATCTGGTCTTCATGGTGTTAATATGAAAACAAGAGTGGATAAGAAAGTATGTCCGTGGTGGAATGGTCCATGCTTCTTTGAAATCCTTGATACAATTGAAGGTCCACCAAGAAATCCAAAAGATCCATTTAGGATGCCTATCATCGACAAGTTCAAGGACATGGGAACAACTGTTATGGGTAAAGTCGAATCTGGCACTGTGCGTGAGGGTGATTCCTTATTGGTTATGCCAAATAAGATACAAGTGAAAGTTACAGCTGTGATGTGTGATGAAAGTAAAGTCAAGAGTGCAGGACCGGGGGAGAATCTTCGTGTTAGAGTAGCTGGAATTGAAGAAGAAGATATAGCGTCTGGGTTTGTACTATCAAGCATTGCAAAACCAATACCTTCTGTTTCTGAGTTTGTTGCACAGTTGCAGATTCTTGAGCTGCTGGATAATGCAATATTTACAGCTGGATATAAGGCGGTACTTCACATTCATGCTGTTGTTGAAGAATGTGAAATCATAGAGCTGCTACAGCAGATCGATCCGAAGACTAGAAAACCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCAGTTATTTTGTGCCGCGTCCAGGTCAATAACTTGATCTGCATTGAGAAGTTTTCTGATGTTCCTCAGCTCGGAAGATTTACACTTCGTACTGAAGGGAAGACAGTTGCCGTAGGAAAAGTCACTGATATTCCAGCTGCAAGCAATTAA 1902 41.43 MLKDPWSPRSSTFKTISLHPNLEEALVVDFIEPDGSWHVNKLEESGTMIEKEDTHFILPREAFFLLTALRETLDLLLRSLRPLFHGILDSLTPLIFAAILAYAESVVLFIYIEEDIRALELDPPDVNGVPNPDAKMEEVVKSDNLEEDARTEEIVKSDEEDHPQQAQAIHVEEQAKENISAKEKEISSTENEDEGDVELDRKRHLNVVFIGHVDAGKSTIGGQILFLSNQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVLLAKTLGVAKLLVVVNKMDDHTVEWSKERYDEIESKMAPFLKSSGYNVKKDVQFLPISGLHGVNMKTRVDKKVCPWWNGPCFFEILDTIEGPPRNPKDPFRMPIIDKFKDMGTTVMGKVESGTVREGDSLLVMPNKIQVKVTAVMCDESKVKSAGPGENLRVRVAGIEEEDIASGFVLSSIAKPIPSVSEFVAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIIELLQQIDPKTRKPMKKKVLFVKNGAVILCRVQVNNLICIEKFSDVPQLGRFTLRTEGKTVAVGKVTDIPAASN 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30853062 30863179 + CePI673135_01g016190.1 Cec01g1619 194836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1619 633 Gene3D - 143 425 IPR027417 -
Cec01g1619 633 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 181 426 - -
Cec01g1619 633 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 523 628 IPR009001 -
Cec01g1619 633 SUPERFAMILY Translation proteins 426 518 IPR009000 -
Cec01g1619 633 MobiDBLite consensus disorder prediction 141 197 - -
Cec01g1619 633 Pfam Elongation factor Tu domain 2 446 512 IPR004161 GO:0005525(InterPro)
Cec01g1619 633 MobiDBLite consensus disorder prediction 141 167 - -
Cec01g1619 633 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 258 273 IPR031157 -
Cec01g1619 633 FunFam Putative translation elongation/initiation factor family protein 520 629 - -
Cec01g1619 633 MobiDBLite consensus disorder prediction 175 197 - -
Cec01g1619 633 Coils Coil 229 249 - -
Cec01g1619 633 CDD eRF3_C_III 520 628 - -
Cec01g1619 633 CDD eRF3_II 433 514 - -
Cec01g1619 633 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 430 516 - -
Cec01g1619 633 PRINTS GTP-binding elongation factor signature 206 219 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec01g1619 633 PRINTS GTP-binding elongation factor signature 301 312 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec01g1619 633 PRINTS GTP-binding elongation factor signature 285 295 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec01g1619 633 PRINTS GTP-binding elongation factor signature 345 354 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec01g1619 633 CDD EF1_alpha 206 427 - -
Cec01g1619 633 Pfam GTP-eEF1A C-terminal domain-like 524 626 IPR054696 -
Cec01g1619 633 Coils Coil 172 192 - -
Cec01g1619 633 Gene3D Translation factors 521 629 - -
Cec01g1619 633 PANTHER TRANSLATION FACTOR 201 626 IPR050100 GO:0003747(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0018444(PANTHER)
Cec01g1619 633 Gene3D Translation factors 431 515 - -
Cec01g1619 633 Pfam Elongation factor Tu GTP binding domain 202 402 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec01g1619 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 437 IPR027417 -
Cec01g1619 633 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 202 431 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1619 K03267 - - csv:101217809 915.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1619 Cec-Chr1:30853062 Cec06g0826 Cec-Chr6:10137765 3.60E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g246 Blo04g00839 Blo16g00126 . . . Bpe13g00367 Bma06g00055 . Cmo13g01039 Cmo18g00045 . . . . . Cpe20g00140 . . . . . . . . . . . . . . . . . . . Lsi02g00219 Csa01g00700 Chy12g01412 Cme12g01846 . . Bda11g01780 . . Bpe15g00536 Bma03g00904 . Sed08g2749 . . Cma13g01003 Cma18g00058 Car13g00838 Car18g00051 Cpe09g01124 Cpe18g00872 Bhi08g01272 Tan05g2214 Cmetu12g0241 Lac10g0273 . . . Cla04g01062 Cam04g1105 Cec01g1619 Cco01g1666 Clacu04g1130 Cmu04g1114 Cre01g1415 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004032 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 44