Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1635 ATGAAAACTTCCGTCCCTCTCTTCCTCTTCTCGTTCTCCTTCACAATCGCGTGGTTTGATCTTCAGCTCTGTTTCAGCAATGACGCCGACGATGAATTTAAAGCTTGCGGTGTGTATTACAACTGGGGAAATTTGGTTAACATCTCATATCCGTTCTGGGGGAATGAGCGGAGGGAATTTTGCGGTCGGCGAGAATTTGAACTCAATTGCAAAGACAACAAAACCACAACGATTCAAATCAATTCTATCGAATATAACGTTCTGAAAATCGACCAATCGGATAATAGAATGACGATCGCAAGATCAGATCTCTTCGACGATTACTGTCCTAAAAATCAAATCGAAACGGCGACGTTGGATCATAGTCTGTTCAAGTATTCTTCGAACGATCTAAATCTGTGGGTGTGGTATGATTGCCCGCCGCAACAGGGGATTCCGGAGGAGTTCATGTTTTCGTGTGGTTGGAACGGGGAACGAAGTGGAAGAGCGAATTATGCTTTGGAGAAGAAGGATAGGATGAATTGGAGTAAAAATATTAGCGGGTGTAAGATGAACATGGAAGTGACGATTACGATGGAGGTATTGAAAGAAGGAGAAAAGAACAGAACAATGGTGGTGGAAAAGGGAATGAAAGAAGGGTTTGAAGTGGAATACGGGGATTTCTACGCCATAGCTTGCGACGGATGCAAGGAATCTGGTGGCGCGTGTGGTGGAAACGCGACTCAAGAGTTATTTTGTTACGTTTGCAAAGGAGCCCCTCCTCCTGGAGGATTGTATGTACATGAATGGAAACAGGCCACTCTAGAATTTCCATATAAAAATGGTAGAAGGAAGCCGGACATTATTATAGGAGCAACAACTTCAGCCGGCTTCATTTTAATAATCTCCATTATCATCTTCATCTACTCCAAGAGAAAAAGAATCTCAAACAAAGACGAAATCGAGGAAATTATTAAGAGATATTCCACACAGACACCCAAGCGATACAGTTACTCCAAGTTAAAGAAGATCACAGACTCTTTCAAGAACAAACTTGGCCAAGGAGGATTTAGCATCGTGTACAAAGGAAAGCTACCAAGTGGATGTGATGTGGCTGTGAAACTTTTAAATGAATCCAGACAAGAAAATGGCCAAGATTTCATCAATGAAGTTGTTAGCATAGCCAAAACTTCGCACGTAAACATAGTCACCCTCATAGGTTTCTGCTACGAGCAGAACAAGAGGGCTTTGGTTTATGAATATATGCCTAAGGGGTCATTGGATAAGTACATATCCCACAACAGACTGCAAGAAAATGATATGAAATTGGATTGGAACACACTCTACAATGTTGTTATTGGTGTGGCACGAGGCTTAGAGTACTTACATCGCGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCACACAGCATACTTTTGGATGATGACTTCTGCCCCAAAATCTCAGATTTTGGGCTGCCCAAGCAATGCAGGCCCAAAGAAACTCATGTATCGATGACAGGTGTGAAAGGGACGGTAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTATAGCTATGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAACCCCAATTCCAATGACAATGATGGAGTGGAGCAGGGCAGTGAAGAGTACTTTCCTGATTGGATATATAACAATCTTACACAAAGTGAAATAGATGGAGGGTGTTGCTGGGGAAGCACAGAGGAAGAAGAAGAAATGACAAGAAAAATGATGATAGTGGGTTTACTTTGTATTCAGACATTGCCCGACGACAGGCCGTCGATGACTGATGTGGTTGCTATGTTGGAAGGCAGTGTTGTTGATGGCTTACAGATTCCACCAAAACCCAACTTGTTTGGACCTCCAACCATTGAGCATCCCCAACCTTCTTTTTCCTCTTCATCCAATTGA 1962 42.51 MKTSVPLFLFSFSFTIAWFDLQLCFSNDADDEFKACGVYYNWGNLVNISYPFWGNERREFCGRREFELNCKDNKTTTIQINSIEYNVLKIDQSDNRMTIARSDLFDDYCPKNQIETATLDHSLFKYSSNDLNLWVWYDCPPQQGIPEEFMFSCGWNGERSGRANYALEKKDRMNWSKNISGCKMNMEVTITMEVLKEGEKNRTMVVEKGMKEGFEVEYGDFYAIACDGCKESGGACGGNATQELFCYVCKGAPPPGGLYVHEWKQATLEFPYKNGRRKPDIIIGATTSAGFILIISIIIFIYSKRKRISNKDEIEEIIKRYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSIVYKGKLPSGCDVAVKLLNESRQENGQDFINEVVSIAKTSHVNIVTLIGFCYEQNKRALVYEYMPKGSLDKYISHNRLQENDMKLDWNTLYNVVIGVARGLEYLHRGCITRILHFDIKPHSILLDDDFCPKISDFGLPKQCRPKETHVSMTGVKGTVGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNSNDNDGVEQGSEEYFPDWIYNNLTQSEIDGGCCWGSTEEEEEMTRKMMIVGLLCIQTLPDDRPSMTDVVAMLEGSVVDGLQIPPKPNLFGPPTIEHPQPSFSSSSN 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30973326 30979242 + CePI673135_01g016350.1 Cec01g1635 194852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1635 653 FunFam serine/threonine-protein kinase PBS1-like 307 414 - -
Cec01g1635 653 MobiDBLite consensus disorder prediction 630 653 - -
Cec01g1635 653 FunFam PR5-like receptor kinase 415 630 - -
Cec01g1635 653 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524(InterPro)
Cec01g1635 653 Pfam Wall-associated receptor kinase C-terminal 167 250 IPR032872 -
Cec01g1635 653 Pfam Wall-associated receptor kinase galacturonan-binding 43 101 IPR025287 GO:0030247(InterPro)
Cec01g1635 653 Pfam Protein tyrosine and serine/threonine kinase 341 618 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec01g1635 653 ProSiteProfiles Protein kinase domain profile. 339 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1635 653 SUPERFAMILY Protein kinase-like (PK-like) 327 636 IPR011009 -
Cec01g1635 653 Gene3D Transferase(Phosphotransferase) domain 1 415 625 - -
Cec01g1635 653 Gene3D Phosphorylase Kinase; domain 1 311 414 - -
Cec01g1635 653 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 638 IPR045874 GO:0004672(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1635 Cec-Chr1:30973326 Cec01g1638 Cec-Chr1:30987515 1.40E-168 dispersed
Cec01g1637 Cec-Chr1:30984571 Cec01g1635 Cec-Chr1:30973326 3.60E-37 dispersed
Cec01g1634 Cec-Chr1:30964839 Cec01g1635 Cec-Chr1:30973326 5.70E-149 tandem
Cec01g1635 Cec-Chr1:30973326 Cec01g1636 Cec-Chr1:30980108 3.00E-187 tandem
Cec01g1635 Cec-Chr1:30973326 Cec10g2153 Cec-Chr10:36036665 1.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71703 PF07714 PK_Tyr_Ser-Thr 8.70E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1635 - - - 0.0