Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1636 ATGGATTTCAAGAGAACCCCTTTTCTTCAAATCATCATCTTCATCATCTTAACTCCCCAAACTCTGTCTTCAGACCAAAACTTTGAAGCTTGTGCTCCAAAATCCTGTGGGAAAGGTCCCAATATAAGCTACCCTTTTTGGATAGCTACTTCACACAGCCCCTTCTGTGGATTACCAAGCTTCGATATTGCCTGCAAAGATAAAAACCCAATTATCAGAATTTCAGAAGATGATTATATTATCAGAGACATTTTCTACAAAAACCATTATTTTCTTTTGAAAAATGCTGCGGTTGACGATGAGAACTGCACAACTCCTCTTCATAATTTCAGCCTCCACGGAACCCCCTTCAATTACAGTTCAGTTCCTTATAATTTCTTCTTCTTCTACAGCTGTACTTCCCTTCCTTCCAATTATAGCTTCCCAATTAATTGTTCTAGCACAAGCAAACTCAATTCTTTTGCTGCTTTTAATGATGGATCCTTGGAGTCCATGAACTCAGCTTACCATTCTTGTAAATCCTCGGTTAAGGTGCCTGTGCACCTCAGTAATAACGAGGAATATAGTTTTCCTGGGTTGTACAGGAAGAGTTACTCTGATGTCTTGAAGAACGGTTTCAGTTTAAATTGGAGGAGTGCCCAAAATTGTAGCAACTGTGAGACAAGTGGTGGCCGATGTGGGATCAAAAGCAACAAGTTTGTTTGCTTTTGTTCTGATGGATCTCATCTCCAAACCTGCAAAGAGGGAAAACTTGATATATGGAAAAAGGCATTAATAGGTGCATCTCCTTTGGGAATTACCATCATTCTGATAATCTCTATTATCATCATCTCCATCTACTACACAAGAAAAAGCTTATCAAACAAAGACAAAATTGAGGAAAGTATAAGGAGTTATTCCACACAAACACCCAAGAGATATAGTTACTCAAAGCTGAAGAAAATCACAGACTCCTTCAAGAACAAACTTGGTCAAGGAGGATTTAGCACTGTCTACAAAGGAAAGCTACCCGACGGGTGCGATGTAGCTGTGAAACTTTTGAATGAGTCTAGTGAAAATGGCCAAGATTTTATGAACGAGGTTGTTAGCATCACCAGAACTTCACATGTAAATATAGCTTCACTCTTAGGTTTCTGCTACGAGAGGAAGAAAAGAGCTTTGATTTATGAATATATGCCTAGAGGGTCATTGGACAAGTATATATCACACCAAGGGCCACAGAGAAACAATGTTGAGTTGGATTGGAACACACTTTATAGCATCATTATTGGCGTGGCACGAGGGTTAGAGTACTTGCATCGTGGTTGCATCACAAGGATTTTGCACTTTGACATCAAACCCCACAACATACTTTTGGATAGTGATTTTTGTCCCAAGATCTCAGACTTTGGGCTTGCCAAGCAATGCAAGGACAAAGAAAGTCATGTGTCAATGACAGGCGTAAAAGGGACGACAGGATTCATTGCACCCGAAGTAATATTCAGGAACTTTGGTAAGGTTTCTCACAAGTCTGATGTTTACAGCTACGGAATGTTGGTTCTTGAAATGGTGGGAGCAAGAAAGAATCCCAATGACAATGATGGAGTGGAGCAGAGGAGTGAAGAGTACTTTCCTGATTGGATATATAAAGATCTTACAGAAAGTGAAATAGATGGAGGGTGTTGGTGGGGAAACACGGAGGAAGAAGAAGAAATGGCAAGAAAAATGATAATTGTGGGGCTGCATTGTATTCAAACATTGCCCGACGACAGGCCGTCGATGACCGATGTGGTTGTGATGTTGGAAGGCAGTGTTGATGGCTTACAGATTCCACCAAAACCCAAATTGTTGGAACCTCCAGCCATTGAGCAGCCCCAACCTTCTTCCTCTTCATCCAACTGGATTTCTAATGATAGTTTGATATTCTAG 1908 40.51 MDFKRTPFLQIIIFIILTPQTLSSDQNFEACAPKSCGKGPNISYPFWIATSHSPFCGLPSFDIACKDKNPIIRISEDDYIIRDIFYKNHYFLLKNAAVDDENCTTPLHNFSLHGTPFNYSSVPYNFFFFYSCTSLPSNYSFPINCSSTSKLNSFAAFNDGSLESMNSAYHSCKSSVKVPVHLSNNEEYSFPGLYRKSYSDVLKNGFSLNWRSAQNCSNCETSGGRCGIKSNKFVCFCSDGSHLQTCKEGKLDIWKKALIGASPLGITIILIISIIIISIYYTRKSLSNKDKIEESIRSYSTQTPKRYSYSKLKKITDSFKNKLGQGGFSTVYKGKLPDGCDVAVKLLNESSENGQDFMNEVVSITRTSHVNIASLLGFCYERKKRALIYEYMPRGSLDKYISHQGPQRNNVELDWNTLYSIIIGVARGLEYLHRGCITRILHFDIKPHNILLDSDFCPKISDFGLAKQCKDKESHVSMTGVKGTTGFIAPEVIFRNFGKVSHKSDVYSYGMLVLEMVGARKNPNDNDGVEQRSEEYFPDWIYKDLTESEIDGGCWWGNTEEEEEMARKMIIVGLHCIQTLPDDRPSMTDVVVMLEGSVDGLQIPPKPKLLEPPAIEQPQPSSSSSNWISNDSLIF 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30980108 30982443 + CePI673135_01g016360.1 Cec01g1636 194853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1636 635 SMART serkin_6 317 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1636 635 Pfam Wall-associated receptor kinase galacturonan-binding 31 91 IPR025287 GO:0030247(InterPro)
Cec01g1636 635 PANTHER RUST RESISTANCE KINASE LR10-RELATED 209 613 IPR045874 GO:0004672(InterPro)
Cec01g1636 635 Gene3D Phosphorylase Kinase; domain 1 289 391 - -
Cec01g1636 635 ProSitePatterns Protein kinases ATP-binding region signature. 323 345 IPR017441 GO:0005524(InterPro)
Cec01g1636 635 FunFam serine/threonine-protein kinase PBS1-like 285 391 - -
Cec01g1636 635 Gene3D Transferase(Phosphotransferase) domain 1 392 602 - -
Cec01g1636 635 SUPERFAMILY Protein kinase-like (PK-like) 292 594 IPR011009 -
Cec01g1636 635 MobiDBLite consensus disorder prediction 616 635 - -
Cec01g1636 635 MobiDBLite consensus disorder prediction 603 635 - -
Cec01g1636 635 Pfam Protein tyrosine and serine/threonine kinase 319 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec01g1636 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec01g1636 635 ProSiteProfiles Protein kinase domain profile. 317 598 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec01g1636 635 Pfam Wall-associated receptor kinase C-terminal 153 240 IPR032872 -
Cec01g1636 635 CDD STKc_IRAK 323 596 - -
Cec01g1636 635 FunFam PR5-like receptor kinase 392 606 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1636 Cec-Chr1:30980108 Cec06g1668 Cec-Chr6:30272827 1.30E-89 dispersed
Cec01g1636 Cec-Chr1:30980108 Cec01g1638 Cec-Chr1:30987515 2.80E-145 proximal
Cec01g1635 Cec-Chr1:30973326 Cec01g1636 Cec-Chr1:30980108 3.00E-187 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71704 PF07714 PK_Tyr_Ser-Thr 1.30E-46 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1636 - - - 0.0