Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1653 ATGGCTGAGTTCACTCCAAACTTTCAAAGCTTAAAGCCATCATCTTTTCCTCTAATGGATGTGAATCCCAACCAAAATCCAACTCTACTTCATAACCCAAATCTTAATTTTCTTCATAACAACATTCCTGTTTTGTTCAATGACAGTTTCTTAGCCAATCAAACTCCTCCTCCTCCTAGATTCCTGGAAAATTGGGGAGAAAATTTCTCTCAAGCCAATCAAATCACTCCTATTTCACATGTTTTTGAGCCTACAAATCCATTTGGAAATGACCTCCATGGAAGCAACAAAAGAAAGCTTGAAAATGATGCTTATGAAAGCAGCTCAGCCAACTCAACCCCTCAAATTTCTGAAAATGGGATCAAGACAAAAAATAACACTGGAAAAGGAAAGCGGTCGAAAAAAAGCGACGAGAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCACAGTGTAGCAGAAAGGATAAGAAGAGGGAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTCCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTACAAAATCAAGTTGAGTTTCTGTCCATGAAACTCACAGCTGCAAGCTCCTTTCACGACTTCAACTCAGACTCAGATGCTGATGACAAATTGAAGACAAAGGAAATGAGAGAAGGAAATGGAGGATTATTGGTTGCATCAACTCAACTTGGTCCTTTTGACTTGAGCTTTGGTTCTTATTCAGCATTGCCATTCAACACCATATGA 822 39.54 MAEFTPNFQSLKPSSFPLMDVNPNQNPTLLHNPNLNFLHNNIPVLFNDSFLANQTPPPPRFLENWGENFSQANQITPISHVFEPTNPFGNDLHGSNKRKLENDAYESSSANSTPQISENGIKTKNNTGKGKRSKKSDENDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFHDFNSDSDADDKLKTKEMREGNGGLLVASTQLGPFDLSFGSYSALPFNTI 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31186710 31188323 + CePI673135_01g016530.1 Cec01g1653 194870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1653 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 222 IPR036638 GO:0046983(InterPro)
Cec01g1653 273 CDD bHLH_AtBPE_like 146 231 - -
Cec01g1653 273 FunFam transcription factor BEE 3-like 153 224 - -
Cec01g1653 273 SMART finulus 162 212 IPR011598 GO:0046983(InterPro)
Cec01g1653 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 99 230 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec01g1653 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983(InterPro)
Cec01g1653 273 MobiDBLite consensus disorder prediction 130 163 - -
Cec01g1653 273 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983(InterPro)
Cec01g1653 273 Gene3D - 153 225 IPR036638 GO:0046983(InterPro)
Cec01g1653 273 MobiDBLite consensus disorder prediction 105 126 - -
Cec01g1653 273 MobiDBLite consensus disorder prediction 80 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1653 Cec-Chr1:31186710 Cec08g0522 Cec-Chr8:15403935 1.40E-37 dispersed
Cec01g1653 Cec-Chr1:31186710 Cec06g1678 Cec-Chr6:30365947 5.90E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28926 PF00010 HLH 5.30E-05 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1653 - - - 0.0