Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1681 ATGCTGCCGTTAGACTCCCCTCTCATCTATCTCACTCTCTCGCAGACACTTTCGCCAGACCACTCGCCGCCGCTCCCCCCAGACACCGTCGTCTGTCGTCGGTCAGGCCACCCCGCCGCTCCAACCACGTCAATTCGCCGGTTGTCGTTCGTGGCCGCCTGCCGTCACGTCCGAGGTCCAGAGAGCCCAATAATTTTATTTAAACGGTCCGAGTTTGTCGGCCCAAATGTGAACGTCCAACTCGACTCACTTATTGAAGTCGTTCAAGTTCGTGGTATCAACTTCTTCAATTTCATTACTTTTATTAGAAATTCTTACGAGAATCATCACTTGGAAGTCAGTGCCATGGTCGTACTGGATGAGAAAGTTCCTTCCTCATCAGAGGTAGAGGCAATGAACAAAAGGCGCAAGAGGAAGAGACCCAAGAAAAATCTTCCTGCAACGGGTGCGGAAGAATCGGAACTTCAAAATCCAATGAAAGGTGAAGAAGAAGGGGAAGGAGATACTGAAGGCAATGTATCAGTGAAGAAAGTGGAAAAAGACGAGAAGATGAAGAAGAGGAAGGCAAAAATGAAGAGGAAGGACGAGTTGGAGGAGGAAGGACATGAAAATGCTAACGATGACGAGGGCGAGGATGGCGTGGAAGGGAAGGTTGAGGAGGATGAGGAGAAAGAGAACGAGGAAAAGAAGTTTAAGACTGTTGGATCAGGAATTATGAGTACTGTTTCATTTGATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCCTTCTCTAGTTGGGAAAGATATCCTTGGAGCTGCAAGGACAGGATCCGGGAAAACTCTTGCCTTTCTTATACCAGCTGTGGAGCTCCTACATCACATCTGCTTTACTCCTCGTAATGGAACTGGTGTTATAGTTATTTGCCCAACACGGGAGCTTGCAATGCAGACACATGAAGTGGCAAAAGAGCTTCTCAAATATCATTCACAGACACTTGGCCTTGTTACTGGTGGTTCTAGCCGACAAGCTGAGGCTGATCGTATTACAAAGGGGGTTAATCTATTAATAGCAACCCCTGGTCGACTTCTTGACCATCTTCAGCATACCAAGAATTTTGTGTTTAAAAATTTGAAGTGCCTCATAATTGATGAAGCAGACAGGATACTGGAAACCAATTTTGAGGAGGAAATGAAACAAATTATAAAGCTTCTACCAAAGAATAGGCAGACTGCTTTATTCTCAGCAACCCAAACACAAAAGGTTGAAGATCTTGTTCGCTTGTCGTTTCAGTCAACTCCTATTTATATTGACGTGGATGATGGAAGAACAAAGGTCACCAACGAGGGGTTGCAACAAGGTTACTGTGTTGTGCCTAGTTCAAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGTCCTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACATTAAGGTCGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCATCAAGGCCGAGACTGGGATCCTACTATGTACTGACGTTGCTGCACGTGGACTTGACATTCCCGCCGTTGATTGGATTGTGCAGTACGATCCTCCAGATGAACCCAAGGAATATATTCACAGAGTTGGCCGAACAGCTCGAGGCGAAGGTAGCAGAGGAAATGCCCTACTTTTCTTGATGCCTGAAGAGCTTCAATTTCTTCACTATCTAAAGGCAGCAAAAGTTCCCGTCAAAGAGTATGAGTTCAGTGATAAGAAACTGGCCAATGTGCAATCTCATCTGGAGAAACTGGTGGGCAGCAATTATTATTTGAACAAGTCGGCTAAGGATGCTTACAGATCCTATATATTAGCTTACAATTCACATTCTATGAAAGATATTTTCAATGTCCACCGCCTTGATCTCCAGGGTATTGCTGCTTCATTCTGCTTTTCCAACCCTCCAAAGGTCAACCTTAACATTGACAGCAGTGCTTCAAAATTCAGGAAGAAAACGCGTAAAGTAGAAGGGAGCAGCAACAGATTCATTAAGAGCAATCCTTATGGGAGGAAGAATGAGGGAGATGAGAGACAGTTTGTAAGATACTAG 2190 44.34 MLPLDSPLIYLTLSQTLSPDHSPPLPPDTVVCRRSGHPAAPTTSIRRLSFVAACRHVRGPESPIILFKRSEFVGPNVNVQLDSLIEVVQVRGINFFNFITFIRNSYENHHLEVSAMVVLDEKVPSSSEVEAMNKRRKRKRPKKNLPATGAEESELQNPMKGEEEGEGDTEGNVSVKKVEKDEKMKKRKAKMKRKDELEEEGHENANDDEGEDGVEGKVEEDEEKENEEKKFKTVGSGIMSTVSFDSLDLSEKTLRAIKDMGFEHMTQIQARAIPPSLVGKDILGAARTGSGKTLAFLIPAVELLHHICFTPRNGTGVIVICPTRELAMQTHEVAKELLKYHSQTLGLVTGGSSRQAEADRITKGVNLLIATPGRLLDHLQHTKNFVFKNLKCLIIDEADRILETNFEEEMKQIIKLLPKNRQTALFSATQTQKVEDLVRLSFQSTPIYIDVDDGRTKVTNEGLQQGYCVVPSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHADLLRYIKVDCMDIHGKQKQQKRTSTFFSFIKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGSRGNALLFLMPEELQFLHYLKAAKVPVKEYEFSDKKLANVQSHLEKLVGSNYYLNKSAKDAYRSYILAYNSHSMKDIFNVHRLDLQGIAASFCFSNPPKVNLNIDSSASKFRKKTRKVEGSSNRFIKSNPYGRKNEGDERQFVRY 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31437286 31442290 - CePI673135_01g016810.1 Cec01g1681 194898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1681 729 Gene3D - 459 704 IPR027417 -
Cec01g1681 729 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 394 402 IPR000629 -
Cec01g1681 729 Gene3D - 172 452 IPR027417 -
Cec01g1681 729 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 242 270 IPR014014 GO:0003724(InterPro)
Cec01g1681 729 MobiDBLite consensus disorder prediction 715 729 - -
Cec01g1681 729 PANTHER RNA HELICASE 233 629 - GO:0000463(PANTHER)|GO:0005730(PANTHER)
Cec01g1681 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 462 632 IPR001650 -
Cec01g1681 729 Pfam DEAD/DEAH box helicase 266 437 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cec01g1681 729 CDD DEADc_DDX18 253 450 IPR044773 GO:0003724(InterPro)|GO:0005524(InterPro)
Cec01g1681 729 Pfam Domain of unknown function (DUF4217) 635 684 IPR025313 -
Cec01g1681 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 598 IPR027417 -
Cec01g1681 729 CDD SF2_C_DEAD 463 593 - -
Cec01g1681 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 448 IPR014001 -
Cec01g1681 729 MobiDBLite consensus disorder prediction 201 222 - -
Cec01g1681 729 SMART ultradead3 261 466 IPR014001 -
Cec01g1681 729 SMART DUF4217_3 623 686 IPR025313 -
Cec01g1681 729 MobiDBLite consensus disorder prediction 124 230 - -
Cec01g1681 729 SMART helicmild6 502 583 IPR001650 -
Cec01g1681 729 FunFam RNA helicase 459 689 - -
Cec01g1681 729 MobiDBLite consensus disorder prediction 156 200 - -
Cec01g1681 729 Coils Coil 180 200 - -
Cec01g1681 729 MobiDBLite consensus disorder prediction 705 729 - -
Cec01g1681 729 Pfam Helicase conserved C-terminal domain 478 581 IPR001650 -
Cec01g1681 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 449 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1681 K13179 - - csv:101209673 1011.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1588 Cec-Chr1:30516414 Cec01g1681 Cec-Chr1:31437286 2.30E-282 dispersed
Cec01g1681 Cec-Chr1:31437286 Cec10g0524 Cec-Chr10:6313091 1.10E-89 dispersed
Cec01g1681 Cec-Chr1:31437286 Cec01g0289 Cec-Chr1:2924343 1.30E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g378 . Blo16g00145 . . . Bpe13g00336 Bma06g00006 . Cmo13g01088 . . . . . . Cpe20g00101 . . . . . . . . . . . . . . . . . . . . Csa01g00641 Chy12g01461 Cme12g01901 . . . . . . . . . . . Cma13g01047 . Car13g00880 . . . Bhi08g01037 . . . . . . Cla04g01117 Cam04g1170 Cec01g1681 Cco01g1729 Clacu04g1198 Cmu04g1177 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003223 0 3 1 2 1 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 1 1 1 2 2 1 1 1 51