Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1704 ATGGGGAGAGGGAGAGTGCAATTGAAGAGGATTGAGAATAAAATTAATAGGCAAGTGACTTTCTCAAAAAGAAGGTCAGGTTTATTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACAAAGGGGAAGCTCTTTGAATACTCAACTGATTCTTGTATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCGGAGAGGAGACTTGTTGCAAATGATAATCAATCAAATGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCATTGAGCCTAAAAGAACTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCACTACAAGAACAAAATAACATGTTAGCCAAGAAGATAAAGGAGAAGGAGAAATTACAAGCTCAAAATTCACAAATGGAACAGAAGCAGAATAGCCCTGCCATGGAATCTTCTCCACTTCTTTTGCCTCAGCCATTCCAATCTCTTAACATGAGTTGTCCATACCCAACACACGGCACCGGAGACGACGACTCTGCCGCGAATCATGACAGATCCGGTGCCCTCCTCCCACCGTGGATGCTCCGCCACCACCTTGGTGATTAA 741 41.57 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANDNQSNGNWTLEHAKLKARIEVLQKNHRHFMGEDLDSLSLKELQNIEQQLDSALKHIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKLQAQNSQMEQKQNSPAMESSPLLLPQPFQSLNMSCPYPTHGTGDDDSAANHDRSGALLPPWMLRHHLGD 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31662116 31668296 - CePI673135_01g017040.1 Cec01g1704 194921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1704 246 Coils Coil 151 191 - -
Cec01g1704 246 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 MobiDBLite consensus disorder prediction 182 214 - -
Cec01g1704 246 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec01g1704 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 MobiDBLite consensus disorder prediction 175 232 - -
Cec01g1704 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cec01g1704 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 Coils Coil 122 145 - -
Cec01g1704 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec01g1704 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cec01g1704 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cec01g1704 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cec01g1704 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1704 Cec-Chr1:31662116 Cec08g1082 Cec-Chr8:22663580 1.10E-68 dispersed
Cec01g1704 Cec-Chr1:31662116 Cec01g1705 Cec-Chr1:31675649 2.50E-41 tandem
Cec04g2284 Cec-Chr4:40466887 Cec01g1704 Cec-Chr1:31662116 4.30E-30 transposed
Cec01g1704 Cec-Chr1:31662116 Cec07g1716 Cec-Chr7:32698954 5.00E-42 wgd
Cec01g1704 Cec-Chr1:31662116 Cec08g1081 Cec-Chr8:22650142 3.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
28933 PF01486 K-box 3.40E-30 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1704 K09264 - csv:101207225 414.075