Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1708 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTGATATCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGGGTGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTAGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAATTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTATTCCATGGATTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAACGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTCGCTCATCTTCGCGATCACAACCTCACCCAGGCAAACTTTTCTCTTCAAGCTTTTGGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGTGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCACTCGTGCTACTGCCATCGACTTCAGCTCTGTGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGAAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTATTTGAGGTGGCAAAGATCAAGCAGATGATGCTACCGGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGATGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACTGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2628 43.3 MNSDKHKFLTVSAAFFLSMISLISAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWGWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTLRWKAASNRPFKMESFIDKSILSLSLIFAITTSPRQTFLFKLLAASAAASATMTPLNVDVPPNKLMELVAKGLVVEKDEILRGNPASALFEFGSSVPTTFGSTQPTRATAIDFSSVHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31716187 31724251 + CePI673135_01g017080.1 Cec01g1708 194925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 618 652 - -
Cec01g1708 875 SMART WD40_4 832 872 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 697 740 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 611 650 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 555 594 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 743 784 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 656 694 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSitePatterns Trp-Asp (WD) repeats signature. 771 785 IPR019775 -
Cec01g1708 875 SUPERFAMILY WD40 repeat-like 554 872 IPR036322 GO:0005515(InterPro)
Cec01g1708 875 Gene3D - 544 874 IPR015943 GO:0005515(InterPro)
Cec01g1708 875 CDD WD40 558 872 - -
Cec01g1708 875 PANTHER PROTEIN COBRA 13 422 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 562 603 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 745 784 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 710 740 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 559 593 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 615 650 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 749 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 708 740 - -
Cec01g1708 875 FunFam Cleavage stimulation factor subunit 50 545 875 - -
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 659 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 760 793 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1708 K14406 - - csv:101203708 804.283
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1708 Cec-Chr1:31716187 Cec07g1712 Cec-Chr7:32659758 3.10E-163 dispersed
Cec01g1708 Cec-Chr1:31716187 Cec06g1749 Cec-Chr6:31021881 2.70E-159 wgd
Cec01g1708 Cec-Chr1:31716187 Cec07g1711 Cec-Chr7:32656333 2.60E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1750 . 48 447 COBRA Gene Family AT5G60920 80.3 1.8e-209 725.3
Cec07g1711 . 44 450 COBRA Gene Family AT5G60920 75.2 7.4e-200 693.3
Cec07g1712 . 31 426 COBRA Gene Family AT5G60920 68.2 1.1e-179 626.3
Cec06g1749 . 55 432 COBRA Gene Family AT5G60920 71.2 5.5e-179 624.0
Cec01g1708 . 37 427 COBRA Gene Family AT5G60920 59.2 3.3e-147 518.5
Cec05g1122 . 31 425 COBRA Gene Family AT5G60920 54.1 2.8e-130 462.2
Cec06g1750 . 22 451 COBRA Gene Family AT3G02210 74.2 5.0e-205 710.7
Cec07g1711 . 19 448 COBRA Gene Family AT3G02210 74.0 4.6e-203 704.1
Cec06g1749 . 27 453 COBRA Gene Family AT3G02210 66.2 1.2e-179 626.3
Cec07g1712 . 5 429 COBRA Gene Family AT3G02210 66.6 1.6e-179 625.9
Cec01g1708 . 11 423 COBRA Gene Family AT3G02210 57.6 1.3e-149 526.6
Cec05g1122 . 1 420 COBRA Gene Family AT3G02210 55.4 1.9e-140 496.1
Cec06g1750 . 21 446 COBRA Gene Family AT3G29810 75.0 3.8e-202 701.0
Cec07g1711 . 29 448 COBRA Gene Family AT3G29810 72.4 1.3e-194 676.0
Cec07g1712 . 14 428 COBRA Gene Family AT3G29810 66.3 1.6e-176 615.9
Cec06g1749 . 38 436 COBRA Gene Family AT3G29810 66.9 1.5e-174 609.4
Cec01g1708 . 24 428 COBRA Gene Family AT3G29810 57.7 6.0e-147 517.7
Cec05g1122 . 13 430 COBRA Gene Family AT3G29810 55.1 1.4e-140 496.5
Cec06g1749 . 32 363 COBRA Gene Family AT5G15630 83.4 3.0e-178 621.3
Cec07g1712 . 9 339 COBRA Gene Family AT5G15630 82.5 2.1e-176 615.1
Cec06g1750 . 31 361 COBRA Gene Family AT5G15630 73.2 1.5e-150 529.3
Cec07g1711 . 29 358 COBRA Gene Family AT5G15630 69.1 1.1e-145 513.1
Cec01g1708 . 15 334 COBRA Gene Family AT5G15630 60.2 4.8e-128 454.5
Cec05g1122 . 19 341 COBRA Gene Family AT5G15630 50.9 5.2e-98 354.8
Cec06g1750 . 19 224 COBRA Gene Family AT5G60950 57.5 3.0e-64 241.9
Cec07g1711 . 27 220 COBRA Gene Family AT5G60950 59.5 1.1e-63 240.0
Cec07g1712 . 27 207 COBRA Gene Family AT5G60950 57.5 1.4e-58 223.0
Cec06g1749 . 51 231 COBRA Gene Family AT5G60950 58.0 2.4e-58 222.2
Cec05g1122 . 12 413 COBRA Gene Family AT1G09790 60.2 4.0e-151 531.6
Cec07g1711 . 25 428 COBRA Gene Family AT1G09790 54.0 2.0e-134 476.1
Cec06g1749 . 41 434 COBRA Gene Family AT1G09790 53.7 2.9e-133 472.2
Cec06g1750 . 32 432 COBRA Gene Family AT1G09790 53.3 7.2e-132 467.6
Cec07g1712 . 3 410 COBRA Gene Family AT1G09790 51.1 5.7e-129 458.0
Cec05g0753 . 34 621 COBRA Gene Family AT4G16120 64.4 1.1e-242 836.3
Cec10g0538 . 166 774 COBRA Gene Family AT4G16120 54.2 4.3e-205 711.4
Cec05g1639 . 1 363 COBRA Gene Family AT4G16120 56.6 4.4e-125 445.7
Cec05g0753 . 11 627 COBRA Gene Family AT3G16860 61.7 6.2e-233 803.9
Cec10g0538 . 166 763 COBRA Gene Family AT3G16860 52.8 2.6e-194 675.6
Cec05g1639 . 1 348 COBRA Gene Family AT3G16860 55.1 7.4e-117 418.3
Cec05g0753 . 7 617 COBRA Gene Family AT5G49270 59.0 4.2e-229 791.2
Cec10g0538 . 166 761 COBRA Gene Family AT5G49270 52.2 1.9e-197 686.0
Cec05g1639 . 1 343 COBRA Gene Family AT5G49270 54.6 1.5e-117 420.6
Cec10g0538 . 106 781 COBRA Gene Family AT3G20580 59.4 9.8e-250 859.8
Cec05g0753 . 27 605 COBRA Gene Family AT3G20580 53.9 2.1e-199 692.6
Cec05g1639 . 1 363 COBRA Gene Family AT3G20580 64.1 3.4e-149 525.8
Cec10g0538 . 166 782 COBRA Gene Family AT4G27110 63.3 4.0e-243 837.8
Cec05g0753 . 24 623 COBRA Gene Family AT4G27110 51.0 1.2e-191 666.8
Cec05g1639 . 2 354 COBRA Gene Family AT4G27110 65.1 5.2e-142 501.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32