Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1708 ATGAATTCAGACAAACACAAATTCCTAACTGTCTCAGCCGCTTTCTTTTTATCTATGATTTCTCTGATATCGGCATTCGACTCGCTGGACCCAAATGGAAAAATCGAAATCAAGTGGGATGTCATGTACTGGACTGCAGATGGTTATGTGGCAACTGTGACTATAACAAACTCTCAGACGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGGGTGGGCAAAGAGAGAGGTTATCTGGTCGATGCAGGGAGCTGAAGCTACTGATCAAGGAGATTGTTCCACATTTCCAGAAACTATCCCACACAGTTGCAAAAGAGATCCATCAGTGGTTGACTTACTTCCAGGTGCTCCTTATAACAAACAGGTAGCTATGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTTCAATTGACTGTTGGTCGTTCCGGTAGTTCAAATAAAACAGTGAGACTTCCTAAGAATTTCACCTTGTATGGTCCCGGGCTAGGTTACACATGTGGCCAAGCAAAGATTGCTCCCCCATCAGCCTTCTATTCATCTGATGGTCTGACTTGGAATGTGACATGCTCTTACTCGCAATTTCTTGCTTCTGAAACACCAACCTGCTGTCTCTCAATGTCATCTTTCTATAACTCAAAAATCACTCCTTGTAAAGCATGTGCTTGTGGCTGCCAAGACAGAGCGACTTGTATCCGGAGTGAATCAGATCTTCAAAGCGTAACAGGATTGAATGCACCTACAAATGACAGTGCTCCATTGCTGCAGTGCACGATACATAACTGTCCAATTCAAGTCCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGGGTCAAGATAACCATCAGCAATCTCAACTATCAATTTAACTATTCACAATGGACTCTTGTCGTTGAGCACCCCAATTTCAACAACACAGTGGAAGTTTATAGCTTTGTCCATAAGCCACTTACCCCTTTCATCTCTAAGAACGACACAGCTCTATTCCATGGATTAAAATCTTTCAATGATGTGCTACTTCAAGCAGGGCCAAACGGAAACGTCTACTCAGAGATGATTTTTCAGAAGGATTCAACATTTACATTGGAACAGGGCTGGGCTTTCCCTCGAAAAGTTTACTTTGATGGAGATGAATGTGTGATGCCATTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGCAAATCCAATTCTATTGTCAACACTAGCTTGCATTTTGCTTCCCATATTCCTTACATTGAGATGGAAGGCAGCTTCGAACAGACCCTTCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCATTGTCGCTCATCTTCGCGATCACAACCTCACCCAGGCAAACTTTTCTCTTCAAGCTTTTGGCTGCAAGTGCTGCTGCTTCAGCTACAATGACACCGCTGAATGTTGATGTTCCACCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGTGGTGGAGAAAGATGAGATATTAAGAGGGAATCCTGCTTCTGCATTGTTTGAATTTGGTTCATCAGTGCCCACTACATTTGGATCTACACAGCCCACTCGTGCTACTGCCATCGACTTCAGCTCTGTGCACGATACAAAAGGTTCGTCAAAGAATTTTCCAAAGCATGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGATTCAGTGCTGATGGAAGATTTGTTGCAACTGGAAGCGCGGATATGTCAATAAAGCTATTTGAGGTGGCAAAGATCAAGCAGATGATGCTACCGGATGCGAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTATGATCACATTCAACCAATAAATGATTTAGATTTTCATCCTCAGAATACTGTTCTTATATCTGGTGCAAAAGATCACACCATAAAGTTCTTTGACTTCTCCAAATTGACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACGCATAACGTGCGTTCTATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCAGGAACGGATCATCCGATTGCCCACCTGTATGATGTCAATACTTTTCAGTGTTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTCAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCGTCAAAAGATGGTGCAGTTCGTTTATGGGATGGCATTAGTGCAAAATGTCTTCGCTCCATTGTTAGTGCACATGGCACAGCAGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAGGTATGTTCTTTCTTGTGGAAAGGACTCGAGTGTAAAGCTCTGGGATGTTGGGACGGGGAGACTGGTCAAACAATATGTTGGAGCTACTCATATGCAACTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTGCTATCAATAGACGAACCAAGCAATGAGATTGTTATCTGGGATGCTTTGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCATGTCGGTGCACCACGGTGGCTCGAGCACTCTCCAACAGAGTCAGCCTTCATTTCCTGTGGGACTGATAAATCGATACGTTTTTGGAAGGAAACTCTCTAG 2628 43.3 MNSDKHKFLTVSAAFFLSMISLISAFDSLDPNGKIEIKWDVMYWTADGYVATVTITNSQTYRHITSPGWTLGWGWAKREVIWSMQGAEATDQGDCSTFPETIPHSCKRDPSVVDLLPGAPYNKQVAMCCKGGVLTSWGQDPSSAVSAFQLTVGRSGSSNKTVRLPKNFTLYGPGLGYTCGQAKIAPPSAFYSSDGLTWNVTCSYSQFLASETPTCCLSMSSFYNSKITPCKACACGCQDRATCIRSESDLQSVTGLNAPTNDSAPLLQCTIHNCPIQVHWHVKENYKGYWRVKITISNLNYQFNYSQWTLVVEHPNFNNTVEVYSFVHKPLTPFISKNDTALFHGLKSFNDVLLQAGPNGNVYSEMIFQKDSTFTLEQGWAFPRKVYFDGDECVMPFPDSYPFLPNLANANPILLSTLACILLPIFLTLRWKAASNRPFKMESFIDKSILSLSLIFAITTSPRQTFLFKLLAASAAASATMTPLNVDVPPNKLMELVAKGLVVEKDEILRGNPASALFEFGSSVPTTFGSTQPTRATAIDFSSVHDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIAHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGISAKCLRSIVSAHGTAEATSAKFTKDERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHMQLRCQAVFNDTEEFVLSIDEPSNEIVIWDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKETL 875
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31716187 31724251 + CePI673135_01g017080.1 Cec01g1708 194925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 618 652 - -
Cec01g1708 875 SMART WD40_4 832 872 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 697 740 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 611 650 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 555 594 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 743 784 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 SMART WD40_4 656 694 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSitePatterns Trp-Asp (WD) repeats signature. 771 785 IPR019775 -
Cec01g1708 875 SUPERFAMILY WD40 repeat-like 554 872 IPR036322 GO:0005515(InterPro)
Cec01g1708 875 Gene3D - 544 874 IPR015943 GO:0005515(InterPro)
Cec01g1708 875 CDD WD40 558 872 - -
Cec01g1708 875 PANTHER PROTEIN COBRA 13 422 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 562 603 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 745 784 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 710 740 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 559 593 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam WD domain, G-beta repeat 615 650 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 708 749 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 Pfam COBRA-like protein 49 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 708 740 - -
Cec01g1708 875 FunFam Cleavage stimulation factor subunit 50 545 875 - -
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 659 IPR001680 GO:0005515(InterPro)
Cec01g1708 875 ProSiteProfiles Trp-Asp (WD) repeats profile. 760 793 IPR001680 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1708 Cec-Chr1:31716187 Cec07g1712 Cec-Chr7:32659758 3.10E-163 dispersed
Cec01g1708 Cec-Chr1:31716187 Cec06g1749 Cec-Chr6:31021881 2.70E-159 wgd
Cec01g1708 Cec-Chr1:31716187 Cec07g1711 Cec-Chr7:32656333 2.60E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1708 K14406 - csv:101203708 804.283