Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec01g1758 ATGGGATTTGTTGGGATATTGGTAATGGGATTTTTGTGTTTGTGCTCTTTGGTTCATGGCTATGGTGGACGCTGGATCAATGACGCTCATGCTACTTTCTATGGCGGCCCCGATGCTTCTGGTACTTTGGGTGGGGCTTGTGGTTATGGGAATGTATATAGCGCGGACTATGGGATTAAAACGACGGCGTTGAGTCCAGCATTGTTCAACAATGGGTTGAGTTGTGGGGCTTGTTTTGAGGTTAGGTGTGTGAATAACCAAAAATGCCTTCCCGGCTCCGTCGTGGTCACCGCCACCAACTTCTGTCCTCCCGGCGGTTGGTGCGCCCCTTCCCTCCACCATTTTGATCTCTCTCAACCTGCCTTCCAAACCATCGCTCAATCCATCGCCGGGGTTGTCCCTGTTGCTTATCGAAGGGTTAAATGTGCAAGAAAGGGAGGAATAAAGTTCAGAATAGAAGGGAATCCAAACTTCAATTTGGTGCTAATAAGCAATGTGGGAGGCGCTGGAGACGTTCATGCAGTTTACATCAAAGGGGGAAGGAATAGTTGGAAGGCAATGGTTAGAAATTGGGGTCAAAATTGGCAAAGCAATGATAATCTTGTAGGACAGTCCCTTTCTTTTAAGGTCATTACTAGTGATGGTCACTCACTTGCGTCTTACAATGTTGCCCCTTCTAGTTGGTCCTTTGGACAAACCTTTGTTGGTAGACAGTTCCCTTAA 723 47.16 MGFVGILVMGFLCLCSLVHGYGGRWINDAHATFYGGPDASGTLGGACGYGNVYSADYGIKTTALSPALFNNGLSCGACFEVRCVNNQKCLPGSVVVTATNFCPPGGWCAPSLHHFDLSQPAFQTIAQSIAGVVPVAYRRVKCARKGGIKFRIEGNPNFNLVLISNVGGAGDVHAVYIKGGRNSWKAMVRNWGQNWQSNDNLVGQSLSFKVITSDGHSLASYNVAPSSWSFGQTFVGRQFP 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32142637 32145200 + CePI673135_01g017580.1 Cec01g1758 194975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Cec01g1758 240 SUPERFAMILY Barwin-like endoglucanases 25 165 IPR036908 -
Cec01g1758 240 CDD DPBB_EXPA_N 28 142 - -
Cec01g1758 240 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Cec01g1758 240 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 FunFam Expansin 147 239 - -
Cec01g1758 240 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 147 IPR007112 -
Cec01g1758 240 Gene3D - 16 143 IPR036908 -
Cec01g1758 240 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Cec01g1758 240 Gene3D - 145 239 IPR036749 -
Cec01g1758 240 SMART dpbb_1 61 137 IPR007112 -
Cec01g1758 240 Pfam Lytic transglycolase 61 137 IPR009009 -
Cec01g1758 240 PANTHER EXPANSIN-A15 11 239 IPR002963 GO:0009664(InterPro)
Cec01g1758 240 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1758 Cec-Chr1:32142637 Cec11g0996 Cec-Chr11:16789062 8.50E-87 dispersed
Cec01g1758 Cec-Chr1:32142637 Cec05g2648 Cec-Chr5:37168435 2.50E-91 wgd
Cec01g1758 Cec-Chr1:32142637 Cec06g1810 Cec-Chr6:31564656 2.70E-93 wgd
Cec01g1758 Cec-Chr1:32142637 Cec09g1926 Cec-Chr9:36138553 1.40E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec01g1758 - - - 0.0